Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACEPSN_RS04110 Genome accession   NZ_CP168691
Coordinates   877504..878754 (+) Length   416 a.a.
NCBI ID   WP_395321105.1    Uniprot ID   -
Organism   Levilactobacillus parabrevis strain FUA 30081     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 872504..883754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSN_RS04090 yfmF 872550..873830 (+) 1281 WP_395321108.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  ACEPSN_RS04095 yfmH 873805..875109 (+) 1305 WP_395345563.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACEPSN_RS04100 - 875222..876163 (+) 942 WP_395321106.1 RodZ domain-containing protein -
  ACEPSN_RS04105 pgsA 876234..876821 (+) 588 WP_395345566.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPSN_RS04110 cinA 877504..878754 (+) 1251 WP_395321105.1 competence/damage-inducible protein A Machinery gene
  ACEPSN_RS04115 recA 878844..879977 (+) 1134 WP_395345568.1 recombinase RecA Machinery gene
  ACEPSN_RS04120 rny 880202..881761 (+) 1560 WP_125701175.1 ribonuclease Y -
  ACEPSN_RS04125 - 882050..882847 (+) 798 WP_395321103.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44896.86 Da        Isoelectric Point: 4.9203

>NTDB_id=1045000 ACEPSN_RS04110 WP_395321105.1 877504..878754(+) (cinA) [Levilactobacillus parabrevis strain FUA 30081]
MQAEIIAVGTEILLGQVVDTNSAYIAQGLADAGIEVYYHSLVGDNADRLTTVVNQARSRSDLVVISGGLGPTKDDLTKQT
VAQLLGVKLVEDAPAMAKIQRHFATTGQKLTPNNRLQALYLAGSTLLKNSTGMAVGSFYRDPHGADLMLLPGPPSELEPM
FENEALPRLEQAYRRQEFLVSRVLRFFGIGEAELVTQLADLIDEQTNPTIAPYAKVNEVTLRLTAAASSTAAGNQLLDDM
TATIQNRVGDFLYGYGDDNSLAQVVVNTLIDRHLTITAAESLTAGKFQSTLGDVPGVSAVFPGGFVTYANDAKRDLLGIP
QQVIDTDGVVSEHTAQEMAERSREKLNTDFALSFTGVAGPDALEGQPAGTVWLGLAQRNQAPQAKLVHLTGNRAKVRERA
VMQALDWLRRILRDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1045000 ACEPSN_RS04110 WP_395321105.1 877504..878754(+) (cinA) [Levilactobacillus parabrevis strain FUA 30081]
ATGCAAGCGGAAATTATTGCGGTCGGGACGGAAATCTTGCTGGGGCAAGTCGTGGATACGAACTCGGCCTACATTGCGCA
GGGATTGGCGGATGCCGGGATCGAAGTCTACTACCATTCTCTCGTTGGGGACAACGCCGATCGGCTAACGACAGTGGTCA
ATCAGGCACGGTCGCGTAGTGATCTGGTGGTCATCAGTGGGGGCCTCGGACCGACCAAAGATGATTTGACGAAACAGACG
GTGGCTCAACTATTAGGGGTTAAATTAGTTGAAGACGCACCAGCCATGGCCAAGATTCAACGGCACTTTGCGACGACTGG
ACAGAAATTGACCCCTAACAATCGCTTGCAGGCACTTTACTTAGCTGGCAGCACACTACTCAAGAACAGCACGGGGATGG
CTGTAGGGTCCTTCTACCGCGATCCTCATGGGGCAGACTTGATGCTGCTACCCGGACCACCCAGCGAATTGGAACCCATG
TTTGAAAATGAGGCGTTACCGCGGCTGGAACAGGCTTATCGGCGCCAAGAATTCTTAGTATCACGCGTCCTGCGGTTCTT
CGGTATCGGTGAAGCCGAGTTGGTGACGCAACTGGCCGATTTGATCGACGAACAGACTAATCCAACGATTGCGCCGTACG
CTAAGGTCAATGAGGTTACGTTGCGTTTGACGGCCGCAGCATCGTCCACGGCGGCTGGTAATCAGCTGTTGGATGACATG
ACGGCAACGATTCAGAATCGCGTGGGGGACTTCCTTTATGGTTATGGCGATGACAATAGTCTGGCACAGGTCGTGGTGAA
CACCTTGATTGATCGACACCTGACGATTACGGCGGCGGAGAGTTTGACCGCTGGTAAGTTTCAGAGCACCTTGGGGGATG
TCCCCGGGGTCTCGGCCGTCTTTCCAGGTGGTTTTGTAACCTACGCCAATGATGCTAAACGTGACTTGCTAGGTATTCCG
CAGCAGGTTATCGACACAGACGGTGTGGTTAGCGAACACACGGCCCAGGAGATGGCGGAACGCTCTCGTGAGAAGTTGAA
TACGGACTTTGCGCTTAGCTTTACCGGTGTCGCGGGTCCGGATGCTCTTGAAGGTCAGCCCGCCGGGACGGTGTGGTTGG
GGTTGGCGCAACGCAACCAGGCCCCACAAGCCAAGCTGGTGCACCTGACCGGTAATCGTGCGAAGGTTCGGGAGCGAGCT
GTGATGCAAGCACTGGATTGGTTACGACGGATTCTACGGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.544

100

0.522
  cinA Streptococcus mitis NCTC 12261

51.069

100

0.517
  cinA Streptococcus pneumoniae Rx1

50.594

100

0.512
  cinA Streptococcus pneumoniae TIGR4

50.594

100

0.512
  cinA Streptococcus pneumoniae R6

50.594

100

0.512
  cinA Streptococcus mutans UA159

50.476

100

0.51
  cinA Streptococcus pneumoniae D39

50.356

100

0.51
  cinA Bacillus subtilis subsp. subtilis str. 168

46.135

99.519

0.459
  cinA Streptococcus suis isolate S10

42.308

100

0.423

Multiple sequence alignment