Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACEO96_RS02950 Genome accession   NZ_CP168657
Coordinates   599146..600372 (-) Length   408 a.a.
NCBI ID   WP_047688859.1    Uniprot ID   A0A223MVC5
Organism   Vibrio anguillarum strain VA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 594146..605372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS02910 (ACEO96_02910) rpsP 594496..594744 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  ACEO96_RS02915 (ACEO96_02915) rimM 594774..595328 (+) 555 WP_013857691.1 ribosome maturation factor RimM -
  ACEO96_RS02920 (ACEO96_02920) trmD 595356..596102 (+) 747 WP_010319524.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACEO96_RS02925 (ACEO96_02925) rplS 596144..596497 (+) 354 WP_010319525.1 50S ribosomal protein L19 -
  ACEO96_RS02930 (ACEO96_02930) yacG 596567..596764 (-) 198 WP_010319526.1 DNA gyrase inhibitor YacG -
  ACEO96_RS02935 (ACEO96_02935) zapD 596854..597594 (-) 741 WP_013857689.1 cell division protein ZapD -
  ACEO96_RS02940 (ACEO96_02940) coaE 597627..598235 (-) 609 WP_064624393.1 dephospho-CoA kinase -
  ACEO96_RS02945 (ACEO96_02945) pilD 598226..599107 (-) 882 WP_170899398.1 A24 family peptidase Machinery gene
  ACEO96_RS02950 (ACEO96_02950) pilC 599146..600372 (-) 1227 WP_047688859.1 type II secretion system F family protein Machinery gene
  ACEO96_RS02955 (ACEO96_02955) pilB 600415..602103 (-) 1689 WP_170899399.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACEO96_RS02960 (ACEO96_02960) - 602108..602563 (-) 456 WP_199485555.1 pilin -
  ACEO96_RS02965 (ACEO96_02965) nadC 602822..603709 (-) 888 WP_094148110.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACEO96_RS02970 (ACEO96_02970) ampD 603834..604385 (+) 552 WP_202599069.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACEO96_RS02975 (ACEO96_02975) fldB 604407..604925 (-) 519 WP_013857680.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45283.64 Da        Isoelectric Point: 10.4379

>NTDB_id=1044815 ACEO96_RS02950 WP_047688859.1 599146..600372(-) (pilC) [Vibrio anguillarum strain VA1]
MNTKIKSELKNYRWKGINSSGKKVSGQTLALTELEVRDKLKEQHIQIKKIKKGGVSFITRLTHRVKARDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILSQVTKGVEAGTPISKAMRTASTHFDTLYVDLIHTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPTMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQSYSLWVLIIIILTTIA
VKAVRQKSFLIRLKTSRLGLKFPILGGVIGKASIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1044815 ACEO96_RS02950 WP_047688859.1 599146..600372(-) (pilC) [Vibrio anguillarum strain VA1]
ATGAACACAAAAATCAAATCAGAACTCAAAAATTATCGTTGGAAAGGCATCAATAGTTCGGGCAAAAAAGTATCTGGCCA
AACTCTCGCTTTAACCGAACTGGAAGTGCGTGACAAACTTAAAGAGCAGCACATTCAGATCAAAAAAATCAAAAAAGGGG
GCGTCTCTTTTATCACCCGCTTGACTCATCGCGTGAAGGCCAGAGACATCACCATTCTGACACGCCAATTGGCGACCATG
CTGACCACGGGCGTGCCCATCGTGCAAGCCTTAAAACTGGTCGGAGATAACCATCGTAAAGCCGAAATGAAATCCATTTT
GTCGCAAGTCACCAAAGGGGTTGAAGCCGGAACGCCAATTTCCAAAGCGATGCGTACCGCCAGCACTCATTTCGATACCT
TGTATGTTGATCTCATTCACACAGGCGAACAGTCAGGTAACTTGGCTGAAGTATTTGAGCGACTAGCGACTTATCGAGAA
AAAAGTGAACAACTGCGCGCTAAAGTCATTAAAGCACTCATCTACCCAACCATGGTGGTGTTGGTCGCGTTAGGTGTTTC
TTACTTAATGCTTACTATGGTGATCCCTGAGTTTGAAAGCATGTTCAAAGGATTCGGAGCCGAATTACCTTGGTTTACAC
AGCAAGTATTGAAACTCTCTCATTGGGTGCAAAGTTACAGTTTGTGGGTACTCATCATCATAATCCTCACCACAATTGCC
GTGAAAGCAGTACGCCAAAAATCTTTTTTAATACGCTTAAAAACCAGCCGATTAGGATTAAAGTTTCCCATTCTTGGCGG
GGTGATAGGCAAAGCCTCTATTGCTAAATTCAGTCGCACACTCGCCACCAGTTTTAGTGCAGGCATTCCGATTTTAGCCA
GCTTAAAAACCACCGCTAAAACCGCTGGCAATGTCCATTTTGAGACGGCGATTAATGAGGTCTATCGTGATACGGCAGCC
GGTATGCCAATGTATATTGCGATGCGTAATACCGAAGCCTTTCCTGAAATGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCAGGCCGATTGGATGACATGCTCAATAAAGTCGCCACCATTTACGAATTTGAAGTCGATAATACCGTCGATAACTTAG
GCAAAATTCTCGAACCATTGATCATTGTCTTTTTGGGTACGGTGGTCGGTGGTTTGGTAGTGGCGATGTACTTGCCCATC
TTTAACTTAATGAGTGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223MVC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

88.75

98.039

0.87
  pilC Vibrio campbellii strain DS40M4

75.248

99.02

0.745
  pilC Acinetobacter baylyi ADP1

42.211

97.549

0.412
  pilC Acinetobacter baumannii D1279779

40.931

100

0.409
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.059

0.4
  pilG Neisseria gonorrhoeae MS11

40.299

98.529

0.397
  pilG Neisseria meningitidis 44/76-A

39.95

98.775

0.395
  pilC Legionella pneumophila strain ERS1305867

39.651

98.284

0.39

Multiple sequence alignment