Detailed information NTG1044814

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEO96_RS02945
• Genome accession: NZ_CP168657
• Coordinates: 598226..599107 (-)
• Length: 293 a.a.
• NCBI ID: WP_170899398.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain VA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 593226..604107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEO96_RS02910 (ACEO96_02910)	rpsP	594496..594744 (+)	249	WP_010319522.1	30S ribosomal protein S16	-
ACEO96_RS02915 (ACEO96_02915)	rimM	594774..595328 (+)	555	WP_013857691.1	ribosome maturation factor RimM	-
ACEO96_RS02920 (ACEO96_02920)	trmD	595356..596102 (+)	747	WP_010319524.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACEO96_RS02925 (ACEO96_02925)	rplS	596144..596497 (+)	354	WP_010319525.1	50S ribosomal protein L19	-
ACEO96_RS02930 (ACEO96_02930)	yacG	596567..596764 (-)	198	WP_010319526.1	DNA gyrase inhibitor YacG	-
ACEO96_RS02935 (ACEO96_02935)	zapD	596854..597594 (-)	741	WP_013857689.1	cell division protein ZapD	-
ACEO96_RS02940 (ACEO96_02940)	coaE	597627..598235 (-)	609	WP_064624393.1	dephospho-CoA kinase	-
ACEO96_RS02945 (ACEO96_02945)	pilD	598226..599107 (-)	882	WP_170899398.1	A24 family peptidase	Machinery gene
ACEO96_RS02950 (ACEO96_02950)	pilC	599146..600372 (-)	1227	WP_047688859.1	type II secretion system F family protein	Machinery gene
ACEO96_RS02955 (ACEO96_02955)	pilB	600415..602103 (-)	1689	WP_170899399.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACEO96_RS02960 (ACEO96_02960)	-	602108..602563 (-)	456	WP_199485555.1	pilin	-
ACEO96_RS02965 (ACEO96_02965)	nadC	602822..603709 (-)	888	WP_094148110.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32931.22 Da
• Isoelectric Point: 7.2157

>NTDB_id=1044814 ACEO96_RS02945 WP_170899398.1 598226..599107(-) (pilD) [Vibrio anguillarum strain VA1]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVNLQDAVIGAIAGYLSLWSVYWLFKLVTAKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG

Nucleotide

• Length: 882 bp

>NTDB_id=1044814 ACEO96_RS02945 WP_170899398.1 598226..599107(-) (pilD) [Vibrio anguillarum strain VA1]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCCCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GACAATATTCCGCTACTCAGTTGGCTCTTTTTAAAAGGGAAATGTTCCCGTTGCCAAGGTCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCTGTCAATTTGCAAGATGCAGTGATCGGCGCCATTGC
TGGCTATCTAAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGCCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	76.389	98.294	0.751
pilD	Vibrio campbellii strain DS40M4	75.779	98.635	0.747
pilD	Acinetobacter nosocomialis M2	55.839	93.515	0.522
pilD	Acinetobacter baumannii D1279779	55.474	93.515	0.519
pilD	Neisseria gonorrhoeae MS11	46.207	98.976	0.457