Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACEN9H_RS01100 | Genome accession | NZ_CP168562 |
| Coordinates | 252066..252503 (+) | Length | 145 a.a. |
| NCBI ID | WP_413673488.1 | Uniprot ID | - |
| Organism | Massilia cellulosiltytica strain CT11-92 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 247066..257503
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEN9H_RS01075 (ACEN9H_01075) | recA | 247238..248317 (+) | 1080 | WP_413673486.1 | recombinase RecA | Machinery gene |
| ACEN9H_RS01080 (ACEN9H_01080) | recX | 248326..248784 (+) | 459 | WP_056124713.1 | recombination regulator RecX | - |
| ACEN9H_RS01085 (ACEN9H_01085) | - | 249049..249606 (+) | 558 | WP_413673487.1 | DUF2889 domain-containing protein | - |
| ACEN9H_RS01090 (ACEN9H_01090) | sucC | 249694..250863 (+) | 1170 | WP_056124707.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACEN9H_RS01095 (ACEN9H_01095) | sucD | 250881..251762 (+) | 882 | WP_056124704.1 | succinate--CoA ligase subunit alpha | - |
| ACEN9H_RS01100 (ACEN9H_01100) | pilA | 252066..252503 (+) | 438 | WP_413673488.1 | pilin | Machinery gene |
| ACEN9H_RS01105 (ACEN9H_01105) | - | 252592..254031 (+) | 1440 | WP_413673489.1 | O-antigen ligase family protein | - |
| ACEN9H_RS01110 (ACEN9H_01110) | - | 254032..254748 (-) | 717 | WP_413673490.1 | flagellar brake protein | - |
| ACEN9H_RS01115 (ACEN9H_01115) | - | 254863..256908 (-) | 2046 | WP_413675542.1 | prolyl oligopeptidase family serine peptidase | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 14847.29 Da Isoelectric Point: 8.4899
>NTDB_id=1044551 ACEN9H_RS01100 WP_413673488.1 252066..252503(+) (pilA) [Massilia cellulosiltytica strain CT11-92]
MKAPKIVKKAQAGFTLIELMIVVAIIGILAAVAIPAYQNYVAKSKFTAALAEVSAGKTGFDVKLNEGATISAPEQVGLAA
KATPTSNCEFDATGTTLLCKIQGGPVTVKDKIITLTRGDDGAWSCKSTLDATDIPKIAGTSCTGS
MKAPKIVKKAQAGFTLIELMIVVAIIGILAAVAIPAYQNYVAKSKFTAALAEVSAGKTGFDVKLNEGATISAPEQVGLAA
KATPTSNCEFDATGTTLLCKIQGGPVTVKDKIITLTRGDDGAWSCKSTLDATDIPKIAGTSCTGS
Nucleotide
Download Length: 438 bp
>NTDB_id=1044551 ACEN9H_RS01100 WP_413673488.1 252066..252503(+) (pilA) [Massilia cellulosiltytica strain CT11-92]
ATGAAAGCACCGAAAATCGTCAAGAAAGCCCAAGCCGGCTTCACCCTGATCGAACTGATGATCGTTGTCGCGATTATCGG
TATCCTGGCCGCCGTGGCTATCCCGGCTTACCAGAATTATGTTGCCAAGTCGAAGTTCACGGCTGCGCTGGCTGAAGTGT
CCGCGGGCAAGACCGGTTTCGACGTGAAACTGAACGAAGGCGCAACCATTTCCGCTCCGGAACAAGTTGGCCTCGCGGCC
AAAGCGACGCCGACCTCCAACTGTGAGTTCGACGCGACGGGCACGACCCTGCTCTGCAAGATCCAGGGCGGCCCGGTTAC
CGTCAAGGACAAGATCATCACCCTGACCCGTGGCGACGACGGCGCATGGTCGTGCAAATCGACTCTGGACGCGACTGACA
TTCCGAAGATCGCAGGCACGTCCTGCACCGGCAGCTAA
ATGAAAGCACCGAAAATCGTCAAGAAAGCCCAAGCCGGCTTCACCCTGATCGAACTGATGATCGTTGTCGCGATTATCGG
TATCCTGGCCGCCGTGGCTATCCCGGCTTACCAGAATTATGTTGCCAAGTCGAAGTTCACGGCTGCGCTGGCTGAAGTGT
CCGCGGGCAAGACCGGTTTCGACGTGAAACTGAACGAAGGCGCAACCATTTCCGCTCCGGAACAAGTTGGCCTCGCGGCC
AAAGCGACGCCGACCTCCAACTGTGAGTTCGACGCGACGGGCACGACCCTGCTCTGCAAGATCCAGGGCGGCCCGGTTAC
CGTCAAGGACAAGATCATCACCCTGACCCGTGGCGACGACGGCGCATGGTCGTGCAAATCGACTCTGGACGCGACTGACA
TTCCGAAGATCGCAGGCACGTCCTGCACCGGCAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Pseudomonas aeruginosa PAK |
48.276 |
100 |
0.483 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
50.758 |
91.034 |
0.462 |
| pilA | Acinetobacter baumannii strain A118 |
46.207 |
100 |
0.462 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.506 |
100 |
0.441 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
45 |
96.552 |
0.434 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.268 |
100 |
0.414 |
| pilA | Vibrio cholerae strain A1552 |
40.268 |
100 |
0.414 |
| pilA | Vibrio cholerae C6706 |
40.268 |
100 |
0.414 |