Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACEN9J_RS26310 Genome accession   NZ_CP168540
Coordinates   5676998..5678233 (-) Length   411 a.a.
NCBI ID   WP_057592099.1    Uniprot ID   -
Organism   Variovorax sp. Varisp41 strain CT11-41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5671998..5683233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN9J_RS26285 (ACEN9J_26285) zapD 5672038..5672793 (-) 756 WP_057592104.1 cell division protein ZapD -
  ACEN9J_RS26290 (ACEN9J_26290) - 5672828..5673841 (-) 1014 WP_057592103.1 hypothetical protein -
  ACEN9J_RS26295 (ACEN9J_26295) - 5673843..5675333 (-) 1491 WP_057592102.1 MBOAT family O-acyltransferase -
  ACEN9J_RS26300 (ACEN9J_26300) coaE 5675408..5676016 (-) 609 WP_172705374.1 dephospho-CoA kinase -
  ACEN9J_RS26305 (ACEN9J_26305) - 5676033..5676998 (-) 966 WP_296729628.1 prepilin peptidase -
  ACEN9J_RS26310 (ACEN9J_26310) pilC 5676998..5678233 (-) 1236 WP_057592099.1 type II secretion system F family protein Machinery gene
  ACEN9J_RS26315 (ACEN9J_26315) pilB 5678264..5679997 (-) 1734 WP_057592120.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACEN9J_RS26325 (ACEN9J_26325) - 5680240..5681232 (-) 993 WP_057592098.1 polyprenyl synthetase family protein -
  ACEN9J_RS26330 (ACEN9J_26330) rplU 5681417..5681728 (+) 312 WP_057592097.1 50S ribosomal protein L21 -
  ACEN9J_RS26335 (ACEN9J_26335) rpmA 5681741..5682001 (+) 261 WP_057592096.1 50S ribosomal protein L27 -
  ACEN9J_RS26340 (ACEN9J_26340) cgtA 5682073..5683149 (+) 1077 WP_413762468.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45066.69 Da        Isoelectric Point: 9.7956

>NTDB_id=1044527 ACEN9J_RS26310 WP_057592099.1 5676998..5678233(-) (pilC) [Variovorax sp. Varisp41 strain CT11-41]
MATAASTTNRQRRDVKEFVFEWEGKDRNGKLVRGELRAGGENQVQAALRRQGVLATKIKKRRTRSGKTIKPKDIAIFTRQ
LATMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLA
TYMEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFSSFGADLPAPTLFVMAVSEFFVAYWWLIFGVIGG
GLYFFFQAWKRNERVQRVMDRLLLRVPIFGALIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQ
EVSTGTSLTNAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSM
YLPIFKLGQVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1044527 ACEN9J_RS26310 WP_057592099.1 5676998..5678233(-) (pilC) [Variovorax sp. Varisp41 strain CT11-41]
ATGGCCACAGCAGCATCGACGACAAACCGGCAACGGCGCGACGTCAAGGAATTCGTCTTCGAGTGGGAAGGCAAGGATCG
CAACGGCAAGCTGGTACGCGGCGAACTGCGTGCCGGCGGCGAAAACCAGGTGCAGGCCGCGCTGCGGCGCCAGGGCGTGC
TCGCGACCAAGATCAAGAAGCGCCGCACGCGCTCGGGCAAGACGATCAAGCCCAAGGACATCGCGATCTTCACGCGCCAG
CTCGCCACCATGATGAAGGCCGGCGTCCCGCTGCTGCAGTCCTTCGACATCGTGGGCCGCGGCAACGCCAATCCCAGCGT
CGCCAAGCTGCTCAACGACATCCGCAGCGACGTCGAGACCGGTACCTCGCTGTCGTCGGCGTTCCGCAAGTTCCCGAAGT
ACTTCGACAACCTCTATTGCAACCTGGTCGAGGCCGGCGAAGCAGCCGGTATCCTCGAGGAACTGCTCGACCGCCTCGCC
ACCTACATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCGACCTCGGTGGTCGTGGTGGC
CTTCGTGGTGGTGGCGATCATCATGATCTTCGTGATCCCGGCCTTCAAGCAGGTGTTCAGCTCCTTCGGCGCCGACCTGC
CCGCGCCCACGCTCTTCGTGATGGCCGTCAGCGAGTTCTTCGTGGCCTACTGGTGGCTGATCTTCGGCGTGATCGGCGGC
GGCCTCTACTTCTTCTTCCAGGCCTGGAAGCGCAACGAGCGCGTGCAGCGGGTCATGGACCGCCTGCTGCTGCGGGTGCC
GATCTTCGGCGCGCTGATCGAGAAGTCCTGCGTCGCGCGCTGGACGCGCACCCTGGCCACCATGTTCGCCGCGGGCGTGC
CGCTGGTCGAAGCCCTCGACTCCGTCGGCGGCGCCTCGGGCAACACCGTGTACGGTGACGCCACGGCCAAGATCCAGCAG
GAGGTGTCGACCGGCACCAGCCTCACGAATGCGATGACCAACGTCAACCTGTTCCCCTCGATGGTGATCCAGATGACCGC
CATCGGCGAGGAATCGGGCTCCATCGACCACATGCTCGGCAAGGCCGCGGACTTCTACGAGTCCGAGGTCGACGACATGG
TCGCCGGCCTGTCGAGCCTGATGGAGCCGATCATCATCGTCTTCCTCGGCGTGATCATCGGCGGCATCGTGGTCTCGATG
TACTTGCCCATCTTCAAGCTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.342

98.054

0.533
  pilG Neisseria gonorrhoeae MS11

52.273

96.35

0.504
  pilG Neisseria meningitidis 44/76-A

52.02

96.35

0.501
  pilC Acinetobacter baylyi ADP1

51.508

96.837

0.499
  pilC Legionella pneumophila strain ERS1305867

50

96.35

0.482
  pilC Acinetobacter baumannii D1279779

49.874

96.594

0.482
  pilC Vibrio cholerae strain A1552

41.25

97.324

0.401
  pilC Thermus thermophilus HB27

38.756

100

0.394
  pilC Vibrio campbellii strain DS40M4

39.547

96.594

0.382

Multiple sequence alignment