Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACEN8S_RS12420 Genome accession   NZ_CP168517
Coordinates   2791766..2793031 (+) Length   421 a.a.
NCBI ID   WP_413623903.1    Uniprot ID   -
Organism   Luteibacter sp. Lutesp34 strain CT11-34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2786766..2798031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN8S_RS12400 (ACEN8S_12400) - 2787140..2787919 (-) 780 WP_413623898.1 class I SAM-dependent methyltransferase -
  ACEN8S_RS12405 (ACEN8S_12405) - 2787922..2788875 (-) 954 WP_413623900.1 glycosyltransferase -
  ACEN8S_RS12410 (ACEN8S_12410) - 2788872..2789726 (-) 855 WP_413623901.1 glycosyltransferase family 2 protein -
  ACEN8S_RS12415 (ACEN8S_12415) pilB 2789894..2791621 (+) 1728 WP_413623902.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACEN8S_RS12420 (ACEN8S_12420) pilC 2791766..2793031 (+) 1266 WP_413623903.1 type II secretion system F family protein Machinery gene
  ACEN8S_RS12425 (ACEN8S_12425) pilD 2793110..2793979 (+) 870 WP_413623904.1 prepilin peptidase Machinery gene
  ACEN8S_RS12430 (ACEN8S_12430) coaE 2793976..2794578 (+) 603 WP_413623905.1 dephospho-CoA kinase -
  ACEN8S_RS12435 (ACEN8S_12435) - 2794692..2795942 (-) 1251 WP_413623906.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  ACEN8S_RS12440 (ACEN8S_12440) - 2795939..2797186 (-) 1248 WP_413623907.1 HD-GYP domain-containing protein -
  ACEN8S_RS12445 (ACEN8S_12445) msrA 2797349..2798023 (+) 675 WP_413623908.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45852.26 Da        Isoelectric Point: 9.9503

>NTDB_id=1044443 ACEN8S_RS12420 WP_413623903.1 2791766..2793031(+) (pilC) [Luteibacter sp. Lutesp34 strain CT11-34]
MAIATATKSTRAIGAARAEVNKLVMYDWTALDKRGKRMKGEMQAKNAALVKAELRRQGMNPQTVREKAKPLFGATGSKVK
PRDVAIFSRQIATMMASGVPMVQAFDIIANGQKNIRFKNMLTEVKNAIEGGASLHEALALYPVEFDELYRNLVHAGESAG
VLDTVLDTVATYKERMESIKAKIKKALFYPIMVLVVAMLVSMILLLFVVPVFEQTFKDAGAELPMPTQVVVSASQFMQSY
WWLVVGGIVGGVAALIMAKKRSLKFAHFLERVSLKLPVMGQILRLSAIARFARTLGVTFHAGVPLVEALEAVSGATGSVI
YGDAVLQMRDDIAVGHQLQLSMRQTGLFPNMVVQMTAIGEESGSLDHMLFKVAEFYEEEVSNAVDNLATLLEPLIMVILG
VLVGGMVVSLYLPIFKLAGTV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=1044443 ACEN8S_RS12420 WP_413623903.1 2791766..2793031(+) (pilC) [Luteibacter sp. Lutesp34 strain CT11-34]
ATGGCTATCGCCACCGCCACGAAGAGCACGCGCGCCATTGGCGCCGCGCGCGCCGAAGTCAACAAGCTGGTCATGTACGA
CTGGACCGCCCTCGACAAGCGCGGCAAGCGCATGAAGGGCGAGATGCAGGCGAAGAACGCCGCGCTGGTGAAGGCGGAGT
TGCGCCGCCAGGGCATGAACCCGCAAACGGTGCGCGAGAAGGCGAAGCCGTTGTTCGGCGCCACCGGCAGCAAGGTCAAG
CCAAGAGACGTCGCCATTTTTAGCCGTCAGATCGCCACAATGATGGCGTCGGGCGTGCCCATGGTGCAGGCCTTCGACAT
CATCGCGAACGGACAGAAAAACATCCGTTTCAAGAACATGCTTACGGAGGTGAAGAACGCCATCGAGGGCGGCGCATCGT
TGCACGAAGCGCTGGCACTTTATCCGGTGGAATTCGACGAGCTTTATCGCAACCTCGTGCATGCGGGCGAATCCGCGGGT
GTGCTCGATACTGTGCTCGACACCGTCGCCACCTACAAGGAGCGCATGGAGAGCATCAAGGCCAAGATCAAGAAGGCCTT
GTTCTACCCCATCATGGTGCTAGTCGTGGCTATGCTGGTCAGCATGATCTTGCTGTTGTTCGTTGTGCCGGTTTTCGAGC
AGACCTTCAAGGACGCCGGGGCCGAGCTTCCCATGCCCACGCAGGTGGTCGTGTCGGCATCGCAATTCATGCAATCGTAT
TGGTGGCTGGTCGTCGGAGGAATCGTCGGCGGGGTAGCGGCGCTCATCATGGCCAAGAAGCGCTCGCTGAAGTTCGCCCA
CTTTCTGGAGCGTGTTTCCCTCAAGCTGCCCGTTATGGGGCAGATCCTCCGGTTGTCCGCCATCGCTCGCTTCGCACGCA
CTCTTGGCGTGACATTCCACGCGGGTGTGCCGCTCGTGGAGGCTCTGGAAGCCGTGTCCGGTGCCACGGGTAGCGTCATC
TACGGTGACGCCGTCCTGCAGATGCGCGACGACATCGCGGTAGGCCACCAGCTTCAACTTTCGATGCGCCAGACGGGCCT
TTTCCCGAACATGGTCGTGCAGATGACGGCGATCGGCGAAGAATCCGGTTCGCTTGACCACATGCTGTTCAAGGTGGCCG
AGTTCTACGAAGAAGAGGTCAGCAACGCCGTCGACAACCTGGCAACGCTTCTTGAGCCGCTAATCATGGTCATCCTGGGT
GTATTGGTGGGTGGCATGGTGGTGTCGCTCTACCTCCCCATCTTCAAGCTCGCCGGCACCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.637

94.774

0.518
  pilC Pseudomonas stutzeri DSM 10701

51.889

94.299

0.489
  pilC Acinetobacter baumannii D1279779

49.874

94.299

0.47
  pilC Acinetobacter baylyi ADP1

48.492

94.537

0.458
  pilC Vibrio campbellii strain DS40M4

40.1

94.774

0.38
  pilG Neisseria gonorrhoeae MS11

41.085

91.924

0.378
  pilG Neisseria meningitidis 44/76-A

40.827

91.924

0.375
  pilC Vibrio cholerae strain A1552

39.796

93.112

0.371

Multiple sequence alignment