Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8628_RS03335 Genome accession   NZ_AP028335
Coordinates   627110..627547 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain BCH-10174     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622110..632547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8628_RS03305 (B10174_06470) - 622727..623140 (+) 414 WP_237925952.1 hypothetical protein -
  R8628_RS03310 (B10174_06480) - 623121..624410 (+) 1290 WP_317653615.1 DUF4118 domain-containing protein -
  R8628_RS03315 (B10174_06490) - 624397..624528 (+) 132 WP_256379349.1 hypothetical protein -
  R8628_RS03320 (B10174_06500) uvrB 624523..626496 (-) 1974 WP_317653616.1 excinuclease ABC subunit UvrB -
  R8628_RS03325 (B10174_06510) - 626651..626881 (+) 231 WP_002852327.1 hypothetical protein -
  R8628_RS03330 (B10174_06520) - 626871..627113 (+) 243 WP_002854947.1 hypothetical protein -
  R8628_RS03335 (B10174_06530) Cj0683 627110..627547 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8628_RS03340 (B10174_06540) priA 627529..629382 (+) 1854 WP_317653617.1 primosomal protein N' -
  R8628_RS03345 (B10174_06550) cipA 629392..630773 (-) 1382 Protein_645 DUF2972 domain-containing protein -
  R8628_RS03350 (B10174_06570) ispG 630919..631992 (+) 1074 WP_002859602.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=104356 R8628_RS03335 WP_002852324.1 627110..627547(+) (Cj0683) [Campylobacter jejuni strain BCH-10174]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=104356 R8628_RS03335 WP_002852324.1 627110..627547(+) (Cj0683) [Campylobacter jejuni strain BCH-10174]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment