Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACEN3N_RS19690 Genome accession   NZ_CP168228
Coordinates   4178040..4180220 (-) Length   726 a.a.
NCBI ID   WP_151961060.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4173040..4185220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS19675 (ACEN3N_19675) - 4175457..4176326 (-) 870 WP_151961058.1 hypothetical protein -
  ACEN3N_RS19680 (ACEN3N_19680) aroB 4176345..4177424 (-) 1080 WP_151961059.1 3-dehydroquinate synthase -
  ACEN3N_RS19685 (ACEN3N_19685) aroK 4177461..4178003 (-) 543 WP_004825383.1 shikimate kinase AroK -
  ACEN3N_RS19690 (ACEN3N_19690) pilQ 4178040..4180220 (-) 2181 WP_151961060.1 type IV pilus secretin PilQ family protein Machinery gene
  ACEN3N_RS19695 (ACEN3N_19695) comL 4180241..4180771 (-) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  ACEN3N_RS19700 (ACEN3N_19700) comO 4180768..4181520 (-) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACEN3N_RS19705 (ACEN3N_19705) pilN 4181517..4182158 (-) 642 WP_151806341.1 PilN domain-containing protein Machinery gene
  ACEN3N_RS19710 (ACEN3N_19710) comM 4182158..4183216 (-) 1059 WP_009587163.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 726 a.a.        Molecular weight: 78825.32 Da        Isoelectric Point: 6.7737

>NTDB_id=1043285 ACEN3N_RS19690 WP_151961060.1 4178040..4180220(-) (pilQ) [Acinetobacter bereziniae strain 2024CK-01176]
MKKSLKNILIGDGKFMNSQLRQFTMATVAIAITQVAAAQTTMTNIVPMKIPGQGTEIRVMFNGLPPQPQAYQLDNPSRLV
LDFDNAKQNISQASIPVASEEASTVDVAADDQRSRLTVHLKNSGAFTTRVEGNTFILKINNANQEPSLPSYVSPTVNKQN
QGIADIGFQRGNTGEGQVIVSLSGANTPVDVQQQGSKVVIRTLGNKIPTHLLRRLNVNDFATPVSSVDAYNEGSNGVITI
QSSGSYEYMAFQAENKLTVSLKRPAENKLARPSASQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLR
LKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKAYAQSIKLAPLQTEYVQLNYAKATDIERMIVQGKN
SNTASNTSSSSSVDPLGDSVGSLLSPRGTISTDPRTNTLIINDTAQKIDQIRKMIDLLDVSVKQVMVEARIVRATTDFTK
EMGVKWGILSQGITKNNDLLVGGSDQTLWDLKTPDDEGKYTITRPDNLNVDLGVTTAGASKIAFGLISLSDFMLDLELSA
LQSDGYGEVISTPKVMTADKQKAKVASGQQIPYQTTSTAGGTATATTSFKDALLSLDVTPSITPDGKVQMQLNITSDSRG
GIAPNGEVILNKNEINTNVLVDNGETVVLGGIFEQENTTSQTKVPFLGDIPYLGRLFRKDAKTENKRELLIFVTPRIVND
SRTRNH

Nucleotide


Download         Length: 2181 bp        

>NTDB_id=1043285 ACEN3N_RS19690 WP_151961060.1 4178040..4180220(-) (pilQ) [Acinetobacter bereziniae strain 2024CK-01176]
ATGAAAAAGAGTTTGAAAAATATCTTGATTGGGGATGGTAAGTTTATGAATAGTCAACTTCGTCAATTTACTATGGCGAC
GGTCGCAATTGCAATTACACAAGTTGCAGCAGCACAAACCACGATGACCAACATTGTTCCGATGAAAATACCAGGGCAAG
GTACAGAAATTCGTGTCATGTTTAATGGTCTTCCTCCGCAGCCACAAGCCTATCAATTGGATAATCCATCTCGTTTAGTA
TTGGACTTTGACAATGCTAAACAAAATATTAGCCAAGCATCTATTCCCGTAGCGAGTGAGGAAGCTTCAACAGTCGATGT
CGCTGCAGATGATCAACGTTCTCGGTTAACAGTACATTTAAAAAATAGTGGCGCTTTTACAACACGTGTAGAAGGCAATA
CTTTTATTTTAAAAATTAATAATGCCAATCAAGAACCGAGCTTACCAAGTTATGTATCTCCGACGGTCAATAAGCAAAAT
CAAGGGATTGCTGATATTGGCTTCCAACGTGGAAATACTGGCGAAGGGCAAGTAATTGTTAGTCTTTCGGGTGCAAATAC
CCCAGTGGATGTTCAGCAGCAAGGCAGTAAGGTCGTTATTCGAACATTGGGAAATAAAATTCCTACACATTTATTGCGTC
GTTTAAATGTCAATGATTTTGCAACACCAGTTTCTAGCGTAGACGCTTATAACGAGGGTTCCAATGGTGTCATCACCATT
CAATCATCGGGTAGCTATGAATATATGGCTTTCCAAGCTGAAAATAAATTAACCGTCAGCTTGAAACGACCTGCAGAAAA
TAAATTGGCTCGCCCAAGTGCAAGTCAATCTTATACAGGTAAGAAAATTTCTTTAGATTTCCAAGATATTGAAGTGCGTC
GAGTATTACAGTTGTTGGCTGACTTTACTGGCATCAATATGGTGGCTGCTGATTCGGTACAAGGTAATATCACCCTGCGC
TTGAAAGATGTGCCTTGGGATCAGGCTTTAGATATTATCCTTAAAACAAAGAATTTGGATAAACGTCGTAACGGGAGTGT
GATTTGGATTGCGCCTGTAACTGAGTTAATTAAAGCCGAAGAAGATGAAGCAAAGGCTTATGCCCAAAGTATTAAGTTAG
CCCCATTACAGACGGAATATGTTCAATTGAATTATGCGAAAGCAACAGATATTGAAAGGATGATTGTGCAGGGTAAAAAT
AGCAATACTGCATCAAATACTTCATCTAGTAGTAGTGTAGATCCATTAGGGGATAGTGTCGGTTCATTGCTTAGCCCGCG
TGGAACAATTTCTACAGATCCACGCACCAATACACTTATCATTAATGATACTGCGCAAAAAATTGATCAAATCCGTAAAA
TGATTGATCTCCTTGATGTATCTGTAAAACAAGTGATGGTTGAAGCACGAATCGTACGTGCTACAACGGACTTTACCAAA
GAGATGGGGGTGAAATGGGGGATTTTATCGCAAGGCATCACCAAAAATAATGACCTCTTGGTGGGGGGGAGTGATCAAAC
TCTGTGGGATTTAAAAACACCTGATGATGAAGGCAAATATACCATTACACGACCTGATAACCTGAATGTAGACCTTGGAG
TTACAACAGCTGGAGCAAGTAAAATTGCTTTTGGTTTAATCAGTTTGTCTGATTTTATGTTGGACTTGGAGTTATCTGCT
TTGCAATCTGATGGGTATGGTGAGGTGATTTCAACGCCAAAAGTCATGACTGCCGATAAGCAAAAAGCCAAAGTGGCATC
TGGTCAACAAATTCCTTATCAAACGACTTCAACAGCTGGCGGTACAGCAACAGCAACCACATCATTTAAAGATGCGCTAT
TAAGTCTGGACGTAACACCTAGTATTACCCCTGATGGTAAAGTACAAATGCAGCTTAATATTACCAGTGATTCTCGAGGT
GGTATTGCCCCGAATGGTGAGGTCATTCTGAATAAGAATGAAATCAATACCAATGTCTTGGTGGATAATGGTGAAACTGT
AGTTTTGGGTGGGATTTTTGAGCAAGAAAATACCACGAGCCAAACTAAAGTGCCATTCTTAGGAGATATTCCTTATTTAG
GGCGTTTATTCCGAAAAGATGCCAAAACAGAGAACAAACGTGAACTGCTAATCTTTGTGACACCAAGAATTGTTAATGAC
AGTCGTACTAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(379-464)

Secretin and TonB N terminus short domain (STN)

(310-352)

Bacterial type II and III secretion system protein (Secretin)

(560-718)

AMIN domain (AMIN)

(55-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.105

100

0.741
  pilQ Acinetobacter baumannii strain A118

74.105

100

0.741
  comQ Acinetobacter baylyi ADP1

73.455

98.072

0.72
  pilQ Pseudomonas aeruginosa PAK

38.618

100

0.393
  pilQ Legionella pneumophila strain ERS1305867

37.971

95.041

0.361
  pilQ Legionella pneumophila strain Lp02

37.971

95.041

0.361

Multiple sequence alignment