Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACEN3N_RS19705 Genome accession   NZ_CP168228
Coordinates   4181517..4182158 (-) Length   213 a.a.
NCBI ID   WP_151806341.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4176517..4187158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS19685 (ACEN3N_19685) aroK 4177461..4178003 (-) 543 WP_004825383.1 shikimate kinase AroK -
  ACEN3N_RS19690 (ACEN3N_19690) pilQ 4178040..4180220 (-) 2181 WP_151961060.1 type IV pilus secretin PilQ family protein Machinery gene
  ACEN3N_RS19695 (ACEN3N_19695) comL 4180241..4180771 (-) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  ACEN3N_RS19700 (ACEN3N_19700) comO 4180768..4181520 (-) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACEN3N_RS19705 (ACEN3N_19705) pilN 4181517..4182158 (-) 642 WP_151806341.1 PilN domain-containing protein Machinery gene
  ACEN3N_RS19710 (ACEN3N_19710) comM 4182158..4183216 (-) 1059 WP_009587163.1 pilus assembly protein PilM Machinery gene
  ACEN3N_RS19715 (ACEN3N_19715) ponA 4183380..4185920 (+) 2541 WP_151961061.1 penicillin-binding protein PBP1a -
  ACEN3N_RS19720 (ACEN3N_19720) - 4185980..4186783 (-) 804 WP_005034349.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23828.28 Da        Isoelectric Point: 4.9781

>NTDB_id=1043288 ACEN3N_RS19705 WP_151806341.1 4181517..4182158(-) (pilN) [Acinetobacter bereziniae strain 2024CK-01176]
MAKINLLPWRDELREQKKKQFVAICVGVALIGLATVLLAWFYFDHKLEDQEQANQLVTSTNQNLDMQLKTLDGLQERRNA
IIERMKLIQGLQGQRPVIVRLVDELVRVVPAQMYITKFSRVGDKFTIEGKAESPNTVAELLRGLEASEWYRNAFMNSFLA
AEENKNESQTSVIPRVEESYGSFVVTVDLGEIASVADDSATKAEQVPAAGGAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1043288 ACEN3N_RS19705 WP_151806341.1 4181517..4182158(-) (pilN) [Acinetobacter bereziniae strain 2024CK-01176]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAGAAAAAGAAACAATTTGTGGCAATCTGTGTGGG
TGTCGCATTGATTGGATTAGCAACTGTGCTATTAGCATGGTTTTATTTTGATCATAAACTTGAGGATCAAGAACAAGCCA
ATCAGTTGGTAACCAGTACCAATCAAAACTTAGATATGCAATTAAAAACTTTAGATGGATTGCAAGAGCGTCGTAATGCC
ATTATTGAGCGAATGAAGTTGATTCAAGGTTTACAAGGACAACGTCCTGTGATTGTTCGCTTGGTTGATGAATTGGTTCG
TGTCGTTCCAGCACAAATGTACATCACGAAATTCAGTCGTGTTGGGGATAAATTTACCATCGAAGGTAAAGCTGAAAGTC
CGAATACCGTTGCTGAATTATTGCGTGGTTTGGAAGCTTCTGAGTGGTATAGAAATGCCTTTATGAATTCATTCCTAGCT
GCAGAAGAAAATAAAAATGAATCACAAACATCCGTAATTCCTCGAGTAGAAGAGTCCTATGGAAGCTTTGTGGTCACTGT
AGATTTAGGGGAAATCGCTTCTGTAGCAGATGATAGTGCAACAAAGGCTGAACAGGTTCCAGCTGCTGGGGGTGCGAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

72.3

100

0.723
  comN Acinetobacter baylyi ADP1

68.075

100

0.681

Multiple sequence alignment