Detailed information    

insolico Bioinformatically predicted

Overview


Name   comM   Type   Machinery gene
Locus tag   ACEN3N_RS19710 Genome accession   NZ_CP168228
Coordinates   4182158..4183216 (-) Length   352 a.a.
NCBI ID   WP_009587163.1    Uniprot ID   A0A0A8TS78
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 4177158..4188216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS19685 (ACEN3N_19685) aroK 4177461..4178003 (-) 543 WP_004825383.1 shikimate kinase AroK -
  ACEN3N_RS19690 (ACEN3N_19690) pilQ 4178040..4180220 (-) 2181 WP_151961060.1 type IV pilus secretin PilQ family protein Machinery gene
  ACEN3N_RS19695 (ACEN3N_19695) comL 4180241..4180771 (-) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  ACEN3N_RS19700 (ACEN3N_19700) comO 4180768..4181520 (-) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACEN3N_RS19705 (ACEN3N_19705) pilN 4181517..4182158 (-) 642 WP_151806341.1 PilN domain-containing protein Machinery gene
  ACEN3N_RS19710 (ACEN3N_19710) comM 4182158..4183216 (-) 1059 WP_009587163.1 pilus assembly protein PilM Machinery gene
  ACEN3N_RS19715 (ACEN3N_19715) ponA 4183380..4185920 (+) 2541 WP_151961061.1 penicillin-binding protein PBP1a -
  ACEN3N_RS19720 (ACEN3N_19720) - 4185980..4186783 (-) 804 WP_005034349.1 putative RNA methyltransferase -
  ACEN3N_RS19725 (ACEN3N_19725) mraY 4186857..4187975 (-) 1119 WP_004825397.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -

Sequence


Protein


Download         Length: 352 a.a.        Molecular weight: 39090.79 Da        Isoelectric Point: 4.5448

>NTDB_id=1043289 ACEN3N_RS19710 WP_009587163.1 4182158..4183216(-) (comM) [Acinetobacter bereziniae strain 2024CK-01176]
MLRLYRKQNKGLVGVDISSTTVKILELSVKNGRYWVESYGLSPLIDGSVVEKNILNPEAVADALERAVNLANPQSQNVAV
AVPTSMVIHKIIEMDADMSDEEREVQIRMDAEQYIPFPLDEVSLDFEVLNDKLANPNRVNVLLVATRAENIESRVEVLEI
AGLSPKIADVESYAIERAFDVFSDTLPIGVNLVGILDIGHTMTTLSVMQKGKIIYTREQVFGGKQLTQDVQNRYGLSYEE
AGRAKKDRTLPDDFETEVLMPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQIDLRKIENDAPSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1043289 ACEN3N_RS19710 WP_009587163.1 4182158..4183216(-) (comM) [Acinetobacter bereziniae strain 2024CK-01176]
GTGCTTAGACTATATCGTAAGCAAAATAAGGGGTTGGTAGGAGTAGATATTAGTTCTACTACTGTAAAAATTTTAGAGCT
CTCTGTTAAGAACGGTCGTTACTGGGTTGAAAGTTATGGATTAAGTCCGCTGATTGATGGGAGTGTGGTTGAAAAAAACA
TTCTCAATCCAGAAGCAGTTGCAGATGCATTAGAGCGAGCAGTTAATCTTGCTAACCCTCAATCGCAAAATGTGGCTGTT
GCTGTACCTACTTCTATGGTGATTCATAAAATCATAGAAATGGATGCAGATATGTCCGATGAGGAAAGAGAAGTTCAGAT
TCGAATGGATGCTGAACAATATATTCCTTTTCCTTTGGATGAAGTGAGCTTAGATTTTGAAGTATTGAATGATAAGTTAG
CCAATCCGAATCGAGTGAATGTACTTTTGGTGGCGACACGTGCTGAAAATATTGAGTCTCGTGTTGAAGTTCTGGAAATT
GCAGGCTTATCTCCTAAAATTGCAGATGTAGAAAGCTATGCCATAGAACGTGCATTCGATGTCTTTTCAGATACTTTACC
CATCGGGGTTAATCTTGTTGGGATCTTAGATATTGGTCACACCATGACCACATTGTCTGTGATGCAAAAAGGTAAGATTA
TTTACACGCGTGAGCAGGTATTTGGGGGCAAACAACTGACACAAGATGTGCAAAATCGTTATGGTTTATCTTATGAGGAA
GCAGGTCGTGCCAAGAAAGACCGCACCTTACCCGATGATTTTGAAACTGAAGTGTTAATGCCGTTTTTAGAAGCTGTGGT
CCAGCAAGCAGCACGTTCATTACAATTCTTCTTCTCCTCCTCACAATTTAATGAGATTGATCACATTTTGCTGGCAGGCG
GAAATGCAAATATCCCTGGACTGGCAAAATTATTACAACAAAAACTTGGTTATCGCGTCACCATCGCAAATCCATTTTTA
CAAATGGGTTTTTCACCACAAATTGACTTAAGAAAAATAGAAAATGATGCACCATCACTTATGGTTGCATGTGGCTTAGC
GTTGAGGAGTTTTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0A8TS78

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

84.943

100

0.849

  pilM Acinetobacter baumannii D1279779

84.659

100

0.847

  comM Acinetobacter baylyi ADP1

81.534

100

0.815

  pilM Legionella pneumophila strain ERS1305867

43.099

100

0.435


Multiple sequence alignment