Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACD631_RS15030 Genome accession   NZ_CP168061
Coordinates   3551189..3552397 (+) Length   402 a.a.
NCBI ID   WP_252118939.1    Uniprot ID   -
Organism   Alteromonas macleodii strain H4-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3546189..3557397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD631_RS15005 (ACD631_15005) ampE 3547041..3547943 (-) 903 WP_039228009.1 beta-lactamase regulator AmpE -
  ACD631_RS15010 (ACD631_15010) ampD 3547986..3548525 (-) 540 WP_252118938.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACD631_RS15015 (ACD631_15015) - 3548709..3549227 (+) 519 WP_014950400.1 TIGR02281 family clan AA aspartic protease -
  ACD631_RS15020 (ACD631_15020) nadC 3549260..3550114 (+) 855 WP_252120143.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACD631_RS15025 (ACD631_15025) - 3550684..3551106 (+) 423 WP_286208348.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACD631_RS15030 (ACD631_15030) pilC 3551189..3552397 (+) 1209 WP_252118939.1 type II secretion system F family protein Machinery gene
  ACD631_RS15035 (ACD631_15035) pilD 3552450..3553343 (+) 894 WP_252118940.1 A24 family peptidase Machinery gene
  ACD631_RS15040 (ACD631_15040) coaE 3553362..3553973 (+) 612 WP_252118941.1 dephospho-CoA kinase -
  ACD631_RS15045 (ACD631_15045) zapD 3554217..3554969 (+) 753 WP_039227984.1 cell division protein ZapD -
  ACD631_RS15050 (ACD631_15050) yacG 3555111..3555338 (+) 228 WP_014980027.1 DNA gyrase inhibitor YacG -
  ACD631_RS15055 (ACD631_15055) - 3555558..3556430 (+) 873 WP_239300629.1 aspartoacylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43687.39 Da        Isoelectric Point: 9.6701

>NTDB_id=1041840 ACD631_RS15030 WP_252118939.1 3551189..3552397(+) (pilC) [Alteromonas macleodii strain H4-1]
MAKAATTFTWQGKDRHGQSRKGEISAVTISEAKNLLRRQGISANKVKKLSKPLFGGAKKITPADISVISRQIATMLAAGV
TLIQSLDMIAQGHANSSMRKLLGEITDEVKSGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPIAVLVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFIAIGIGGAGFMFMRTY
KRSQKLRDTVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYREAILYMRKEVAGGMPMH
VAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1041840 ACD631_RS15030 WP_252118939.1 3551189..3552397(+) (pilC) [Alteromonas macleodii strain H4-1]
ATGGCAAAAGCAGCAACTACATTTACTTGGCAAGGTAAGGATAGGCATGGACAGTCGCGCAAAGGCGAAATATCCGCGGT
TACCATTTCAGAAGCTAAAAACCTGTTGCGACGCCAAGGCATTTCTGCAAATAAAGTTAAAAAATTATCCAAGCCGCTCT
TCGGTGGTGCGAAAAAAATCACACCAGCCGACATTTCTGTCATTTCTCGTCAAATCGCCACCATGCTTGCCGCAGGTGTT
ACACTTATTCAGTCCTTGGATATGATTGCGCAGGGACATGCCAACTCGTCGATGCGGAAACTTTTAGGCGAAATTACCGA
TGAGGTTAAATCAGGTAACCCGCTCTCATCGGCCCTTAGAAAACACCCTCTTTATTTTGACGATTTATATTGCGACTTGG
TTTATACCGGTGAGCAATCGGGCGCACTTGAAACCATTTATGACCGCATTGCGACCTATAAAGAAAAGGCCGAAGCACTA
AAATCAAAAATCAAAAAAGCGATGTTTTACCCTATCGCAGTTTTGGTTGTTGCTTTTATTGTTACGACCATCCTTCTTAT
ATTTGTTGTGCCGCAGTTTGAAGAGATTTTCAGCAGCTTTGGCGCAGAACTCCCTGCCTTCACCCAGTTCGTTTTGGCTA
TTTCCCGATTTGTACAAGACTACGGTATTTTTATCGCCATAGGTATTGGCGGTGCTGGGTTTATGTTTATGCGCACCTAT
AAGCGAAGCCAGAAGCTACGTGACACGGTAGACCGCAACATTTTAAAAATTCCCGTCATTGGCGAAATATTAAAAAAAGC
CAGCATTGCGCGCTTTACCCGAACCCTAGCCACGACCTTCGCAGCAGGAGTGCCGCTTATTGGCGCACTAGAATCCGCTG
CCGGAGCTTCGGGCAACGCAGTATACCGCGAGGCCATTTTATACATGCGTAAAGAAGTGGCGGGCGGTATGCCAATGCAT
GTTGCAATGCGCGCTACACAAGTATTCCCTGACATGGTGACACAGATGATTGCCATTGGTGAGGAGTCGGGCGCGGTTGA
TGAAATGCTCAGCAAAATTGCCACCATATATGAAGCTGAAGTCGATGATATGGTAGACGGTTTAACTAGCCTACTTGAAC
CTATGATCATGGCCGTACTTGGCGTGGTAATCGGCGGCTTGATTGTGGCTATGTACCTCCCTATATTCCAGATGGGTAAC
GTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.194

98.756

0.585
  pilC Acinetobacter baumannii D1279779

52.854

100

0.53
  pilC Legionella pneumophila strain ERS1305867

52.897

98.756

0.522
  pilC Acinetobacter baylyi ADP1

52.645

98.756

0.52
  pilG Neisseria meningitidis 44/76-A

45.7

100

0.463
  pilG Neisseria gonorrhoeae MS11

45.455

100

0.46
  pilC Vibrio cholerae strain A1552

45.592

98.756

0.45
  pilC Vibrio campbellii strain DS40M4

43.577

98.756

0.43
  pilC Thermus thermophilus HB27

37

99.502

0.368

Multiple sequence alignment