Detailed information NTG1041841

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACD631_RS15035
• Genome accession: NZ_CP168061
• Coordinates: 3552450..3553343 (+)
• Length: 297 a.a.
• NCBI ID: WP_252118940.1
• Uniprot ID: -
• Organism: Alteromonas macleodii strain H4-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3547450..3558343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACD631_RS15010 (ACD631_15010)	ampD	3547986..3548525 (-)	540	WP_252118938.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACD631_RS15015 (ACD631_15015)	-	3548709..3549227 (+)	519	WP_014950400.1	TIGR02281 family clan AA aspartic protease	-
ACD631_RS15020 (ACD631_15020)	nadC	3549260..3550114 (+)	855	WP_252120143.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACD631_RS15025 (ACD631_15025)	-	3550684..3551106 (+)	423	WP_286208348.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACD631_RS15030 (ACD631_15030)	pilC	3551189..3552397 (+)	1209	WP_252118939.1	type II secretion system F family protein	Machinery gene
ACD631_RS15035 (ACD631_15035)	pilD	3552450..3553343 (+)	894	WP_252118940.1	A24 family peptidase	Machinery gene
ACD631_RS15040 (ACD631_15040)	coaE	3553362..3553973 (+)	612	WP_252118941.1	dephospho-CoA kinase	-
ACD631_RS15045 (ACD631_15045)	zapD	3554217..3554969 (+)	753	WP_039227984.1	cell division protein ZapD	-
ACD631_RS15050 (ACD631_15050)	yacG	3555111..3555338 (+)	228	WP_014980027.1	DNA gyrase inhibitor YacG	-
ACD631_RS15055 (ACD631_15055)	-	3555558..3556430 (+)	873	WP_239300629.1	aspartoacylase	-
ACD631_RS15060 (ACD631_15060)	-	3556518..3557807 (-)	1290	WP_039227980.1	methyl-accepting chemotaxis protein	-
ACD631_RS15065 (ACD631_15065)	-	3557817..3558185 (-)	369	WP_014950410.1	response regulator	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32831.89 Da
• Isoelectric Point: 7.0536

>NTDB_id=1041841 ACD631_RS15035 WP_252118940.1 3552450..3553343(+) (pilD) [Alteromonas macleodii strain H4-1]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSAGEPTPNDKNSTASEEVFNLVKPDST
CPSCGHKIRAWENIPVISYLFLKGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=1041841 ACD631_RS15035 WP_252118940.1 3552450..3553343(+) (pilD) [Alteromonas macleodii strain H4-1]
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAACGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAGAGCTATTTTA
GCGCGGGTGAGCCGACACCTAACGATAAAAACTCAACAGCGTCAGAGGAAGTATTCAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAAATTCGCGCATGGGAAAATATTCCTGTTATTAGCTACCTGTTCCTTAAAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGTTACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCATTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTTTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGTTTATGGTCTGTTTATTGGCTATTTAAACTTGCCACTG
GCAAAGAAGGTATGGGCTATGGCGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATCTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTATCTTG
ATTACGTACTTTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (146-254)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.088	95.96	0.529
pilD	Vibrio campbellii strain DS40M4	53.103	97.643	0.519
pilD	Acinetobacter baumannii D1279779	50.538	93.939	0.475
pilD	Acinetobacter nosocomialis M2	50.179	93.939	0.471
pilD	Neisseria gonorrhoeae MS11	47.94	89.899	0.431