Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACDW34_RS16350 Genome accession   NZ_CP167896
Coordinates   3350779..3352005 (+) Length   408 a.a.
NCBI ID   WP_130072260.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3345779..3357005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS16310 (ACDW34_16310) rimP 3346121..3346645 (-) 525 WP_130072256.1 ribosome maturation factor RimP -
  ACDW34_RS16335 (ACDW34_16335) secG 3347456..3347788 (-) 333 WP_130072257.1 preprotein translocase subunit SecG -
  ACDW34_RS16340 (ACDW34_16340) tpiA 3347798..3348592 (-) 795 WP_372403656.1 triose-phosphate isomerase -
  ACDW34_RS16345 (ACDW34_16345) pilB 3349037..3350752 (+) 1716 WP_286434881.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACDW34_RS16350 (ACDW34_16350) pilC 3350779..3352005 (+) 1227 WP_130072260.1 type II secretion system F family protein Machinery gene
  ACDW34_RS16355 (ACDW34_16355) pilD 3352005..3352868 (+) 864 WP_130072261.1 A24 family peptidase Machinery gene
  ACDW34_RS16360 (ACDW34_16360) coaE 3352880..3353476 (+) 597 WP_174493876.1 dephospho-CoA kinase -
  ACDW34_RS16365 (ACDW34_16365) - 3353545..3354462 (-) 918 WP_372403657.1 DMT family transporter -
  ACDW34_RS16370 (ACDW34_16370) rlmB 3354506..3355258 (-) 753 WP_372403659.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACDW34_RS16375 (ACDW34_16375) - 3355398..3355721 (-) 324 WP_065993789.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44951.52 Da        Isoelectric Point: 9.9081

>NTDB_id=1040182 ACDW34_RS16350 WP_130072260.1 3350779..3352005(+) (pilC) [Acinetobacter piscicola strain p38]
MAVKKAQMMPTFIYDGVDRKGVKIKGELPARNMALAKVTLRKQGINIKTIREKKKNILEGLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLDNPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDRLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPIAVIVVAIVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQSYWFILIIGIGVVIT
AFLETKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRLTNLFPSMAIQMVAIGEESGSLDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1040182 ACDW34_RS16350 WP_130072260.1 3350779..3352005(+) (pilC) [Acinetobacter piscicola strain p38]
ATGGCTGTCAAGAAAGCACAAATGATGCCGACATTCATTTATGACGGGGTAGATCGTAAAGGGGTTAAGATTAAAGGGGA
ACTACCTGCGCGTAATATGGCTTTAGCCAAAGTCACACTAAGAAAACAAGGTATTAATATTAAAACCATTCGAGAAAAGA
AGAAAAATATTCTCGAAGGTTTAATGAAAAAGAAAGTCACCACTTTAGATATCACGATTTTTACTCGACAACTTGCGACC
ATGATGAAAGCGGGGGTACCTTTAGTACAAAGCTTTGAAATTGTTGCCGAAGGTCTAGATAATCCCGCAATGCGTGAAGT
CGTGTTAGGGATTAAAGGTGAAGTTGAAGGGGGGAATACTTTTGCTGGGGCATTAAAGAAATATCCACAATATTTCGACC
GCTTGTTTTGCTCACTGGTTGAGTCAGGTGAACAATCGGGTGCACTTGAAACTATGTTAGACCGTGTCGCGATTTATAAA
GAAAAAAGTGAGCTTTTAAAACAAAAAATTAAAAAAGCCATGAAATATCCTATTGCAGTTATTGTCGTCGCAATCGTGGT
TACCATTATTTTGATGGTTAAAGTTGTTCCCGTTTTCCAAGATCTTTTCTCATCTTTTGGCGCTGATCTTCCTGCTTTCA
CTCAGATGGTGGTCAACATGTCAAAATGGATGCAAAGCTATTGGTTTATCTTGATTATTGGTATTGGGGTCGTGATTACT
GCATTTCTTGAAACCAAAAAGCGGAGTAAAAAATTTCGTGATTTCCTTGATAAAGCTGCACTCAAAGCCCCTATTTTTGG
CGACTTAGTCTATAAAGCGATTATTGCACGTTATAGTCGTACGCTTGCCACGACCTTTGCTGCAGGTGTGCCATTAATTG
ATGCCCTCGAATCTACAGCAGGCGCAACCAATAATGTTGTTTATGAAGAAGCCGTAATGAAAATTCGTGATGACGTGGCA
ACAGGTCAACAACTACAATTTGCAATGCGCCTCACCAATTTATTCCCTTCAATGGCCATTCAAATGGTTGCTATTGGGGA
GGAATCAGGTTCGTTAGATGCCATGCTTGATAAAGTTGCAACACACTTCGAAAACGAAGTCGATAATGCGGTAGATGGCT
TAACCTCAATGATGGAGCCATTAATCATGGCAGTACTCGGTGTACTTGTTGGTGGTCTCGTGATTGCCATGTACCTTCCA
ATCTTCCAAATGGGTTCAGTAGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.196

100

0.902
  pilC Acinetobacter baylyi ADP1

82.598

100

0.826
  pilC Pseudomonas stutzeri DSM 10701

60.741

99.265

0.603
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria meningitidis 44/76-A

47.99

97.549

0.468
  pilG Neisseria gonorrhoeae MS11

47.99

97.549

0.468
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404

Multiple sequence alignment