Detailed information NTG1040183

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACDW34_RS16355
• Genome accession: NZ_CP167896
• Coordinates: 3352005..3352868 (+)
• Length: 287 a.a.
• NCBI ID: WP_130072261.1
• Uniprot ID: -
• Organism: Acinetobacter piscicola strain p38
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3347005..3357868

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDW34_RS16335 (ACDW34_16335)	secG	3347456..3347788 (-)	333	WP_130072257.1	preprotein translocase subunit SecG	-
ACDW34_RS16340 (ACDW34_16340)	tpiA	3347798..3348592 (-)	795	WP_372403656.1	triose-phosphate isomerase	-
ACDW34_RS16345 (ACDW34_16345)	pilB	3349037..3350752 (+)	1716	WP_286434881.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACDW34_RS16350 (ACDW34_16350)	pilC	3350779..3352005 (+)	1227	WP_130072260.1	type II secretion system F family protein	Machinery gene
ACDW34_RS16355 (ACDW34_16355)	pilD	3352005..3352868 (+)	864	WP_130072261.1	A24 family peptidase	Machinery gene
ACDW34_RS16360 (ACDW34_16360)	coaE	3352880..3353476 (+)	597	WP_174493876.1	dephospho-CoA kinase	-
ACDW34_RS16365 (ACDW34_16365)	-	3353545..3354462 (-)	918	WP_372403657.1	DMT family transporter	-
ACDW34_RS16370 (ACDW34_16370)	rlmB	3354506..3355258 (-)	753	WP_372403659.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACDW34_RS16375 (ACDW34_16375)	-	3355398..3355721 (-)	324	WP_065993789.1	pyrimidine/purine nucleoside phosphorylase	-
ACDW34_RS16380 (ACDW34_16380)	recN	3355994..3357655 (+)	1662	WP_286434884.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31845.20 Da
• Isoelectric Point: 7.7617

>NTDB_id=1040183 ACDW34_RS16355 WP_130072261.1 3352005..3352868(+) (pilD) [Acinetobacter piscicola strain p38]
MADILNYFIITPSALYLLVGLLGLCIGSFLNVVIYRTPKMMEQEWQQECQLLLHPEQAIIDQSKLTLSTPASTCPKCKSP
IHWYQNIPVISWLVLRGQCGTCKNPISIRYPFIEVLTACCSLLVVAVYGPTLAMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINSFAIYTSATSAIWGYIIGFLCLWVVYYAFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQN

Nucleotide

• Length: 864 bp

>NTDB_id=1040183 ACDW34_RS16355 WP_130072261.1 3352005..3352868(+) (pilD) [Acinetobacter piscicola strain p38]
ATGGCTGATATTCTCAACTATTTCATCATCACACCCAGTGCGCTATATCTTTTGGTTGGTTTACTTGGGTTATGTATTGG
TAGTTTTTTAAATGTTGTGATTTATCGCACACCGAAAATGATGGAGCAAGAATGGCAACAAGAATGCCAACTCTTGCTGC
ATCCAGAACAAGCCATTATTGATCAAAGTAAACTGACATTAAGCACACCTGCTTCAACTTGTCCAAAATGTAAATCGCCG
ATTCATTGGTATCAAAACATTCCTGTGATCAGCTGGTTAGTTTTACGTGGTCAATGTGGCACATGTAAAAACCCAATTAG
CATTCGCTATCCATTTATTGAAGTCTTAACTGCCTGTTGCTCTCTTTTAGTGGTTGCGGTTTATGGACCAACGCTTGCGA
TGCTATTTGGTCTCATCCTGACATGGACACTCATTGCACTCACGTTTATCGATTTCGATACACAACTGCTGCCAGACCGC
TTCACTTTGCCTTTAGCTGCACTAGGTTTGGGTATTAATAGTTTTGCCATTTATACCTCTGCAACTTCTGCGATTTGGGG
CTATATCATCGGTTTTTTATGCTTATGGGTGGTCTATTATGCGTTTAAAATCATCACAGGCAAAGAAGGCATGGGCTATG
GCGATTTTAAATTACTCGCTGCTCTAGGTGCATGGATGGGACCTCTCATGCTACCGTTAATCGTCTTACTCTCCTCTTTG
GTGGGGGCGATTATTGGTATTATTTTACTTAAAGTTCGTAAAGAAAATCAGCCTTTCGCTTTTGGTCCTTATATTGCAAT
TGCGGGTTGGATTGCCTTTTTATGGGGCGAACAAATTATGAAAGTCTATTTAGGACAAAATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	80.351	99.303	0.798
pilD	Acinetobacter nosocomialis M2	80.351	99.303	0.798
pilD	Vibrio cholerae strain A1552	52.941	100	0.533
pilD	Vibrio campbellii strain DS40M4	48.772	99.303	0.484
pilD	Neisseria gonorrhoeae MS11	46.97	91.986	0.432