Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACDH70_RS18160 Genome accession   NZ_CP167865
Coordinates   4262858..4264117 (-) Length   419 a.a.
NCBI ID   WP_228963903.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4257858..4269117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDH70_RS18150 (ACDH70_18150) coaE 4261333..4261974 (-) 642 WP_228963906.1 dephospho-CoA kinase -
  ACDH70_RS18155 (ACDH70_18155) - 4261988..4262851 (-) 864 WP_228963904.1 A24 family peptidase -
  ACDH70_RS18160 (ACDH70_18160) pilC 4262858..4264117 (-) 1260 WP_228963903.1 type II secretion system F family protein Machinery gene
  ACDH70_RS18165 (ACDH70_18165) pilA2 4264470..4264877 (+) 408 WP_228963900.1 pilin Machinery gene
  ACDH70_RS18170 (ACDH70_18170) - 4264959..4266863 (+) 1905 WP_228963898.1 hypothetical protein -
  ACDH70_RS18175 (ACDH70_18175) - 4266878..4267330 (+) 453 WP_228963894.1 GtrA family protein -
  ACDH70_RS18180 (ACDH70_18180) - 4267323..4268867 (+) 1545 WP_228963893.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46036.47 Da        Isoelectric Point: 10.2875

>NTDB_id=1040006 ACDH70_RS18160 WP_228963903.1 4262858..4264117(-) (pilC) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939]
MSVARSAIKKQPVDRNTSLLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESIGKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLVVTVGSIVGFIFTYKRSPRMQHGIDRFILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVFRMRDDVSVGYPINMAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVADYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1040006 ACDH70_RS18160 WP_228963903.1 4262858..4264117(-) (pilC) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCCTGCTGCAGACCTTCATTTGGGAAGG
GGCAGACAAGCGTGGTGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAACATGTTGCGTGCCGAACTGCGCCGCC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCAAAGCCTCTGTTCGGAGCGGCCGGCAAGAAGATCACAGCCAAAGAC
ATTGCTTTCTTTAGTCGTCAGATGGCCACGATGATGAAGTCAGGCGTGCCTATCGTCAGCTCTTTGGAAATCATCGGCGA
GGGGCATAAGAACCCACGCATGAAAAAGATGGTCGGCCAAGTCAGGACAGACATCGAAGGAGGATCCTCGCTCTACGAGT
CAATCGGCAAACATCCTGTTCAGTTTGACGAGCTCTACCGCAATCTTGTCCGTGCTGGCGAAGGCGCTGGCGTATTGGAA
ACGGTCCTCGATACGGTTGCTACGTATAAGGAGAATATTGAAGCGCTCAAGGGCAAGATCAAAAAGGCGATGTTTTACCC
TGCGATGGTAGTTGCCGTAGCAATCATCGTGAGTGCGATTTTGCTGATTTTCGTGGTACCTCAGTTTGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACTCAGCTTCTCGTCAACGCCTCTCGCTTCATGGTGAGTTATTGGTGGTTG
ATGCTGGTAGTGACAGTTGGATCTATCGTTGGCTTTATTTTTACTTACAAGCGTTCTCCACGGATGCAGCACGGCATTGA
TCGATTTATCCTCAAGGTTCCCGTGATCGGGCAGATCATGCACAACAGCGCCATTGCACGTTTTGCACGCACTACTGCCG
TGACGTTCAAGGCAGGCGTTCCTCTAGTAGAGGCACTTGGAATCGTAGCTGGCGCCACTGGCAATAAGGTTTATGAAGAA
GCTGTTTTCAGGATGCGGGACGATGTGTCAGTCGGCTATCCGATCAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTAGTGCAGATGACCGCGATCGGCGAGGAAGCAGGCGCCTTGGACGCGATGCTGTTCAAGGTTGCTGATTACTTCG
AGCAGGAGGTCAACAATGCCGTGGACGCACTCAGCAGCCTGCTGGAGCCGCTGATCATGGTGTTTATTGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.709

96.897

0.511
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Acinetobacter baylyi ADP1

50.123

96.659

0.484
  pilC Acinetobacter baumannii D1279779

49.383

96.659

0.477
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.75

95.465

0.408
  pilC Vibrio cholerae strain A1552

40

95.465

0.382
  pilC Vibrio campbellii strain DS40M4

39

95.465

0.372
  pilC Thermus thermophilus HB27

38.5

95.465

0.368

Multiple sequence alignment