Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCQ04_RS15570 Genome accession   NZ_CP167851
Coordinates   3660247..3661503 (+) Length   418 a.a.
NCBI ID   WP_226427347.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 2866     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3655247..3666503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ04_RS15555 (ACCQ04_15555) pilR 3655861..3657255 (+) 1395 WP_051634076.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ04_RS15560 (ACCQ04_15560) pilB 3657469..3659205 (-) 1737 WP_226427346.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ04_RS15565 (ACCQ04_15565) - 3659461..3659895 (-) 435 WP_104646205.1 pilin -
  ACCQ04_RS15570 (ACCQ04_15570) pilC 3660247..3661503 (+) 1257 WP_226427347.1 type II secretion system F family protein Machinery gene
  ACCQ04_RS15575 (ACCQ04_15575) - 3661510..3662373 (+) 864 WP_016849610.1 A24 family peptidase -
  ACCQ04_RS15580 (ACCQ04_15580) coaE 3662387..3663010 (+) 624 WP_054592195.1 dephospho-CoA kinase -
  ACCQ04_RS15585 (ACCQ04_15585) - 3663020..3663265 (+) 246 WP_372358788.1 SymE family type I addiction module toxin -
  ACCQ04_RS15590 (ACCQ04_15590) - 3663369..3664703 (-) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  ACCQ04_RS15595 (ACCQ04_15595) - 3664696..3665373 (-) 678 WP_006448355.1 response regulator transcription factor -
  ACCQ04_RS15600 (ACCQ04_15600) - 3665405..3665875 (-) 471 WP_221198812.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45514.71 Da        Isoelectric Point: 10.2788

>NTDB_id=1039851 ACCQ04_RS15570 WP_226427347.1 3660247..3661503(+) (pilC) [Xanthomonas sp. NCPPB 2866]
MSAVRSAIKNKPAVQADQMSPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPTVVKVKPKPLFGSAGQKVTSKDI
SFFSRQMATMMKSGVPIVAALEIIGTGHKNPRMRSMVGQIRSDIEGGSSLHEAIGRHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPATVVAVALLVSSILLIFVVPQFEDVFKGFGAELPAFTQMIVNASRFMVSWWWLI
LFVVVGAVVGFIYAYKRSPSMQHGMDRLVLKVPIIGKIMHNSSIARFSRTTAVTFKAGVPLVEALSIVAGATGNSVYEKA
VLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMIFIGTVVG
GMVIGMYLPIFKLATVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1039851 ACCQ04_RS15570 WP_226427347.1 3660247..3661503(+) (pilC) [Xanthomonas sp. NCPPB 2866]
ATGTCAGCAGTACGTAGTGCCATCAAGAACAAGCCGGCTGTACAGGCAGATCAGATGAGCCCGTTTGTCTGGGAGGGAAC
AGACAAGCGCGGCATCAAGATGAAAGGCGAGCAGACCGCCAAGAATGCGAACTTGCTACGCGCAGAATTGCGACGCCAGG
GCATTACGCCCACTGTTGTCAAGGTGAAGCCCAAGCCTCTGTTTGGCTCTGCCGGTCAGAAGGTGACCTCAAAGGATATT
TCCTTCTTTAGCCGGCAGATGGCGACAATGATGAAGTCGGGCGTTCCAATCGTCGCTGCGCTGGAAATAATTGGCACCGG
CCATAAAAACCCGCGCATGCGTAGCATGGTCGGACAGATTCGTAGCGATATCGAGGGTGGCTCATCGCTGCACGAGGCAA
TTGGCAGGCACCCGGTGCAGTTCGATGAACTGTATCGAAACCTGGTCAAGGCTGGCGAAGGCGCGGGCGTCCTTGAGACA
GTGCTGGACACCGTGGCCACCTATAAAGAGAACCTGGAAGCATTAAAGGGAAAGATCAAGAAGGCTCTGTTCTATCCTGC
AACCGTGGTCGCGGTAGCGCTTTTGGTCAGTTCAATTCTGCTGATCTTCGTCGTGCCGCAGTTTGAAGATGTTTTCAAAG
GTTTCGGTGCGGAACTTCCTGCATTCACCCAGATGATTGTCAATGCATCCAGGTTCATGGTGTCTTGGTGGTGGTTGATC
TTGTTTGTGGTGGTCGGGGCCGTGGTTGGCTTTATCTACGCATACAAACGCTCCCCATCGATGCAACACGGCATGGACCG
CTTGGTGCTCAAGGTGCCGATTATTGGCAAGATAATGCACAACAGCTCGATCGCTCGCTTTTCCCGGACCACAGCCGTGA
CCTTCAAGGCTGGCGTGCCGCTGGTAGAAGCGTTAAGCATTGTTGCTGGCGCCACGGGCAATTCTGTTTACGAAAAAGCT
GTGCTGCGCATGCGGGACGATGTGTCGGTAGGCTACCCGGTTAATGTCGCGATGAAGCAGGTCAATCTGTTCCCGCACAT
GGTGGTGCAGATGACTGCCATAGGCGAAGAAGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTCGCCGAGTACTTCGAGC
AAGAGGTCAACAACGCGGTTGACGCCCTTAGCAGCTTGCTTGAACCACTCATCATGATATTCATTGGTACCGTTGTCGGC
GGCATGGTCATCGGCATGTACCTGCCTATTTTCAAGCTAGCCACTGTAGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.346

96.89

0.507
  pilC Acinetobacter baylyi ADP1

51.351

97.368

0.5
  pilC Acinetobacter baumannii D1279779

51.351

97.368

0.5
  pilC Legionella pneumophila strain ERS1305867

51.358

96.89

0.498
  pilG Neisseria gonorrhoeae MS11

43.564

96.651

0.421
  pilG Neisseria meningitidis 44/76-A

43.317

96.651

0.419
  pilC Vibrio cholerae strain A1552

42.118

97.129

0.409
  pilC Vibrio campbellii strain DS40M4

40.943

96.411

0.395

Multiple sequence alignment