Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCP99_RS05955 Genome accession   NZ_CP167849
Coordinates   1378457..1379719 (-) Length   420 a.a.
NCBI ID   WP_069288196.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 3443     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1372260..1388274 1378457..1379719 within 0


Gene organization within MGE regions


Location: 1372260..1388274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP99_RS05940 (ACCP99_05940) - 1372260..1376303 (-) 4044 WP_372356856.1 RHS repeat-associated core domain-containing protein -
  ACCP99_RS05945 (ACCP99_05945) coaE 1376962..1377573 (-) 612 WP_277572157.1 dephospho-CoA kinase -
  ACCP99_RS05950 (ACCP99_05950) - 1377587..1378450 (-) 864 WP_003491180.1 A24 family peptidase -
  ACCP99_RS05955 (ACCP99_05955) pilC 1378457..1379719 (-) 1263 WP_069288196.1 type II secretion system F family protein Machinery gene
  ACCP99_RS05960 (ACCP99_05960) - 1379830..1381791 (-) 1962 WP_071117393.1 hypothetical protein -
  ACCP99_RS05965 (ACCP99_05965) - 1381858..1382262 (-) 405 WP_372356857.1 pilin -
  ACCP99_RS05970 (ACCP99_05970) - 1382499..1382999 (+) 501 WP_372356858.1 EamA family transporter -
  ACCP99_RS05975 (ACCP99_05975) - 1383004..1383798 (+) 795 WP_005915828.1 glycosyltransferase -
  ACCP99_RS05980 (ACCP99_05980) - 1383813..1384841 (+) 1029 WP_372356859.1 glycosyltransferase -
  ACCP99_RS05985 (ACCP99_05985) - 1384834..1385490 (+) 657 WP_157733690.1 methionine biosynthesis protein MetW -
  ACCP99_RS05990 (ACCP99_05990) pilB 1385588..1387324 (+) 1737 WP_071117396.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45933.45 Da        Isoelectric Point: 10.3728

>NTDB_id=1039827 ACCP99_RS05955 WP_069288196.1 1378457..1379719(-) (pilC) [Xanthomonas sp. NCPPB 3443]
MSALGSTVKKGAKPANRVNAMTSFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGATGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWF
PILLVIVGSAVGLIMAYKRSPRMQHLFDRLILKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1039827 ACCP99_RS05955 WP_069288196.1 1378457..1379719(-) (pilC) [Xanthomonas sp. NCPPB 3443]
ATGTCAGCACTTGGCAGCACTGTGAAGAAGGGGGCTAAACCGGCCAATCGCGTAAACGCGATGACGTCGTTCGTTTGGGA
AGGGACAGACAAACGCGGCGTCAAGATGAAGGGGGATGAACTGGCTCGCAATGCAAATATGTTGCGCGCCGAACTCCGTC
GCAGGGGGATCAATCCCACTGTCGTCAAGACAAAGCCTAAGCCGCTGTTTGGCGCAACTGGCAAGCCGATCAAACCTAAG
GACATCGCATTTTTCAGTCGCCAGATCGCGACCATGATGAAATCCGGTGTCCCGATGGTCGGCACTCTGGAAATCATCGG
CGAGGGCTCCAAAAACCCCCGCATGCGAAAGATGGTTGGCGAGATTCGTACCGACATCGAAGGCGGATCGTCGCTCAACG
AAGCGATCAGCAGACATCCAGTGCAGTTTGACGAGCTCTATCGCAACTTGGTCCGGGCCGGCGAAAGCGCCGGCGTGCTG
GATACCGTGCTAGATACCGTGGCGACCTACAAGGAAAATATCGAAGCACTGAAGGGCAAGATTAAAAAAGCCCTTTTTTA
TCCTGCAATGGTGATGGCAGTAGCGTTGATCGTCAGTTCCATATTGCTGATCTGGGTGGTACCACAGTTTGAGACGGTAT
TCTCCAGCTTCGGGGCGGAATTACCTGCGTTCACCCAGATGATCGTGAATCTTTCTCGATTCATGGTTTCCTGGTGGTTC
CCAATCCTGTTAGTGATCGTTGGGTCGGCCGTTGGGCTGATAATGGCCTACAAGCGGTCACCCCGGATGCAACATTTATT
TGATCGTCTGATTTTAAAAGTGCCAGTAATCGGCAAGATTATGCACGACAGTTCGATTGCCCGATTTGCACGAACAACCG
CCGTCACCTTCAAGGCAGGCGTTCCTTTGGTCGAAGCGCTGGGAATCGTCGCGGGCGCGACTGGTAACAAGGTCTATGAG
GAAGCAGTCCTGAGGATGCGAGACGACGTATCTGTTGGCTACCCTGTCAATCTGTCGATGAAGCAAGTCAACCTTTTTCC
GCACATGGTGATTCAGATGACTGCGATCGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTCGCTGAATACT
TTGAGCAAGAAGTCAACAACGCCGTCGATGCATTGAGCAGCCTGCTTGAGCCTATGATCATGATCTTTATTGGCACTATC
GTCGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.286

0.51
  pilC Legionella pneumophila strain ERS1305867

51.128

95

0.486
  pilC Acinetobacter baylyi ADP1

50

96.667

0.483
  pilC Acinetobacter baumannii D1279779

48.148

96.429

0.464
  pilG Neisseria meningitidis 44/76-A

42.928

95.952

0.412
  pilG Neisseria gonorrhoeae MS11

42.394

95.476

0.405
  pilC Vibrio cholerae strain A1552

39.163

96.667

0.379
  pilC Vibrio campbellii strain DS40M4

39.25

95.238

0.374
  pilC Thermus thermophilus HB27

38.366

96.19

0.369

Multiple sequence alignment