Detailed information NTG1039791

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACCQ05_RS05450
• Genome accession: NZ_CP167846
• Coordinates: 1292905..1294161 (-)
• Length: 418 a.a.
• NCBI ID: WP_372393157.1
• Uniprot ID: -
• Organism: Xanthomonas sp. NCPPB 3582
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1274558..1300646	1292905..1294161	within	0

Gene organization within MGE regions

Location: 1274558..1300646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCQ05_RS05370 (ACCQ05_05370)	-	1274716..1275108 (+)	393	WP_104539086.1	hypothetical protein	-
ACCQ05_RS05375 (ACCQ05_05375)	-	1275197..1275589 (+)	393	WP_064511049.1	H-NS family nucleoid-associated regulatory protein	-
ACCQ05_RS05380 (ACCQ05_05380)	glgX	1276099..1278231 (-)	2133	WP_372393148.1	glycogen debranching protein GlgX	-
ACCQ05_RS05385 (ACCQ05_05385)	rimK	1278688..1279605 (+)	918	WP_372393149.1	30S ribosomal protein S6--L-glutamate ligase	-
ACCQ05_RS05390 (ACCQ05_05390)	-	1279697..1280281 (+)	585	WP_372393150.1	hypothetical protein	-
ACCQ05_RS05395 (ACCQ05_05395)	-	1280300..1280977 (+)	678	WP_003490678.1	response regulator transcription factor	-
ACCQ05_RS05400 (ACCQ05_05400)	-	1280970..1282304 (+)	1335	WP_372393151.1	sensor histidine kinase	-
ACCQ05_RS05405 (ACCQ05_05405)	-	1282490..1282575 (+)	86	Protein_1041	IS5/IS1182 family transposase	-
ACCQ05_RS05410 (ACCQ05_05410)	-	1282627..1282839 (-)	213	WP_372393152.1	hypothetical protein	-
ACCQ05_RS05415 (ACCQ05_05415)	-	1282841..1284183 (-)	1343	Protein_1043	RHS repeat-associated core domain-containing protein	-
ACCQ05_RS05420 (ACCQ05_05420)	-	1284198..1284701 (-)	504	WP_372393154.1	hypothetical protein	-
ACCQ05_RS05425 (ACCQ05_05425)	-	1284691..1286283 (-)	1593	Protein_1045	RHS repeat domain-containing protein	-
ACCQ05_RS05430 (ACCQ05_05430)	-	1286285..1286608 (-)	324	WP_372393155.1	hypothetical protein	-
ACCQ05_RS05435 (ACCQ05_05435)	-	1286605..1291161 (-)	4557	WP_372393156.1	DUF4329 domain-containing protein	-
ACCQ05_RS05440 (ACCQ05_05440)	coaE	1291380..1292021 (-)	642	WP_228963906.1	dephospho-CoA kinase	-
ACCQ05_RS05445 (ACCQ05_05445)	-	1292035..1292898 (-)	864	WP_338339698.1	A24 family peptidase	-
ACCQ05_RS05450 (ACCQ05_05450)	pilC	1292905..1294161 (-)	1257	WP_372393157.1	type II secretion system F family protein	Machinery gene
ACCQ05_RS05455 (ACCQ05_05455)	-	1294593..1295054 (+)	462	WP_372393158.1	pilin	-
ACCQ05_RS05460 (ACCQ05_05460)	-	1295129..1295758 (+)	630	WP_372393159.1	isoprenylcysteine carboxylmethyltransferase family protein	-
ACCQ05_RS05465 (ACCQ05_05465)	-	1295797..1296888 (+)	1092	WP_372393160.1	hypothetical protein	-
ACCQ05_RS05470 (ACCQ05_05470)	pilB	1296969..1298678 (+)	1710	WP_372393943.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACCQ05_RS05475 (ACCQ05_05475)	pilB	1298744..1298863 (+)	120	WP_372393161.1	pilus assembly protein	Machinery gene
ACCQ05_RS05480 (ACCQ05_05480)	-	1300272..1300633 (+)	362	Protein_1056	transposase	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45889.36 Da
• Isoelectric Point: 10.3223

>NTDB_id=1039791 ACCQ05_RS05450 WP_372393157.1 1292905..1294161(-) (pilC) [Xanthomonas sp. NCPPB 3582]
MSVVRSVIKKQPVDRSTQLQQFVWEGTDKRGVKMKGEQTARNMNMLRAELRRQGISPNVVKPKPKPLFGAAGKKISAKDI
AFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQIRSDIEGGSSLHEAISRHPVQFDELYRNLVRAGEGAGVLET
VLDTIANYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWLL
LIVVAGTLAGFIFAYKRSPRMQHGMDRLILKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEEA
VLKMRDDVSVGYPVNMSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIVG
GMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1257 bp

>NTDB_id=1039791 ACCQ05_RS05450 WP_372393157.1 1292905..1294161(-) (pilC) [Xanthomonas sp. NCPPB 3582]
ATGTCCGTGGTACGAAGCGTCATTAAGAAACAACCAGTTGACCGTAGCACGCAGTTGCAGCAATTCGTTTGGGAAGGAAC
GGATAAGCGTGGCGTCAAGATGAAGGGGGAGCAGACAGCCCGTAACATGAATATGCTAAGGGCTGAACTTCGTCGTCAGG
GCATATCTCCTAATGTTGTCAAGCCAAAACCCAAACCGCTGTTTGGAGCTGCAGGGAAGAAAATAAGCGCTAAAGACATT
GCGTTCTTTAGCCGCCAAATGGCCACGATGATGAAGTCAGGCGTCCCTATTGTTGGCTCTCTTGAAATCATTGGCGAGGG
GCATAAAAATCCCCGAATGAAAAAAATGGTCGGACAGATCCGTTCCGATATTGAAGGCGGGTCTTCCCTGCATGAGGCAA
TTAGCAGGCATCCCGTTCAATTTGATGAACTATATCGAAACTTGGTGAGAGCTGGTGAAGGCGCAGGTGTTCTAGAAACA
GTCTTAGACACAATAGCAAATTATAAAGAGAATATCGAAGCACTAAAGGGGAAAATCAAGAAAGCGCTGTTTTATCCAGC
AATGGTGGTTGCGGTAGCCATCATTGTTAGCGCTATTCTATTGATATTTGTGGTGCCGCAATTTGAAGACGTGTTCAAAG
GATTTGGCGCAGAACTCCCAGCTTTTACACAAATGATCGTCGCCGCCTCTCGATTCATGGTCAGCTATTGGTGGCTTTTG
CTGATAGTGGTAGCAGGCACACTAGCCGGCTTCATCTTCGCATACAAACGCTCCCCAAGAATGCAGCATGGCATGGATCG
TTTAATTTTAAAATTTCCTGTCATTGGTCAGATCATGCATAACAGTTCAATCGCAAGATTTGCGCGAACTACAGCGGTAA
CATTCAAAGCCGGCGTTCCGCTTGTGGAAGCCCTTGGCATTGTAGCCGGGGCTACAGGCAACAAAGTTTATGAAGAGGCC
GTTTTGAAAATGCGTGATGATGTTTCAGTGGGTTACCCAGTTAATATGTCAATGAAGCAAGTAAATCTCTTCCCGCACAT
GGTTATTCAGATGACAGCAATCGGCGAAGAAGCTGGCGCACTGGATGCAATGCTGTTCAAGGTTGCTGAGTACTTCGAGC
AGGAAGTAAACAATGCGGTAGACGCATTGAGCAGTTTGCTTGAACCTATGATCATGGTATTTATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	53.788	94.737	0.51
pilC	Legionella pneumophila strain ERS1305867	51.861	96.411	0.5
pilC	Acinetobacter baylyi ADP1	51.385	94.976	0.488
pilC	Acinetobacter baumannii D1279779	49.754	97.129	0.483
pilG	Neisseria gonorrhoeae MS11	43.89	95.933	0.421
pilG	Neisseria meningitidis 44/76-A	43.392	95.933	0.416
pilC	Vibrio cholerae strain A1552	41.25	95.694	0.395
pilC	Vibrio campbellii strain DS40M4	39.206	96.411	0.378