Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABQY74_RS15360 Genome accession   NZ_CP167821
Coordinates   3591035..3592294 (+) Length   419 a.a.
NCBI ID   WP_349792119.1    Uniprot ID   -
Organism   Xanthomonas sp. WHRI 7064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3586035..3597294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQY74_RS15345 (ABQY74_015345) pilR 3586481..3587875 (+) 1395 WP_016901261.1 sigma-54 dependent transcriptional regulator Regulator
  ABQY74_RS15350 (ABQY74_015350) pilB 3588335..3590068 (-) 1734 WP_349792116.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQY74_RS15355 (ABQY74_015355) - 3590253..3590657 (-) 405 WP_043088084.1 pilin -
  ABQY74_RS15360 (ABQY74_015360) pilC 3591035..3592294 (+) 1260 WP_349792119.1 type II secretion system F family protein Machinery gene
  ABQY74_RS15365 (ABQY74_015365) - 3592301..3593164 (+) 864 WP_016849610.1 A24 family peptidase -
  ABQY74_RS15370 (ABQY74_015370) coaE 3593178..3593801 (+) 624 WP_349792121.1 dephospho-CoA kinase -
  ABQY74_RS15375 (ABQY74_015375) - 3593922..3594056 (+) 135 WP_372470099.1 SymE family type I addiction module toxin -
  ABQY74_RS15380 (ABQY74_015380) - 3594161..3595495 (-) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  ABQY74_RS15385 (ABQY74_015385) - 3595488..3596165 (-) 678 WP_006448355.1 response regulator transcription factor -
  ABQY74_RS15390 (ABQY74_015390) - 3596275..3596631 (-) 357 WP_349792123.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45807.13 Da        Isoelectric Point: 10.3152

>NTDB_id=1039589 ABQY74_RS15360 WP_349792119.1 3591035..3592294(+) (pilC) [Xanthomonas sp. WHRI 7064]
MSAIRSAIKKEAVSRSIDQQLQFIWEGKDKRGVKMKGEQTSKSANLLRAELRRQGITPTVVKVKPKPLFGAAGKTVTPKD
IAFFSRQMATMMKSGVPIVGALEIIGSGHKNPRMRNMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKAMFYPAMVMAVALIVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNASRFMVAWWWL
LLIVLVGSITGFIFAYKRSPGMQHGMDRLILKPPVLGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPIIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1039589 ABQY74_RS15360 WP_349792119.1 3591035..3592294(+) (pilC) [Xanthomonas sp. WHRI 7064]
ATGTCAGCAATACGTAGCGCAATCAAGAAAGAGGCCGTGTCCCGCTCAATCGACCAGCAGTTGCAATTCATCTGGGAGGG
TAAGGACAAGCGCGGCGTCAAGATGAAGGGGGAACAGACCTCCAAGAGTGCTAACTTGCTGCGCGCAGAATTGCGTCGCC
AAGGCATCACGCCAACGGTAGTGAAGGTCAAACCCAAGCCGTTATTCGGCGCGGCGGGCAAGACGGTCACACCTAAAGAT
ATCGCTTTTTTCAGCCGTCAAATGGCGACGATGATGAAGTCAGGCGTCCCAATTGTGGGTGCCCTCGAAATTATTGGCAG
TGGCCACAAGAACCCCCGTATGCGGAACATGGTTGGGCAGATCCGCACGGATATTGAGGGGGGCTCCTCGTTGCATGAAG
CAATTAGCAAGCATCCCGTGCAATTTGACGAGCTCTACCGAAATCTCGTCCGTGCAGGCGAAGGCGCGGGCGTACTTGAG
ACCGTTCTTGATACGGTGGCGAATTACAAAGAAAACATCGAAGCACTTAAGGGCAAGATCAAAAAAGCGATGTTCTACCC
GGCAATGGTGATGGCCGTCGCACTGATTGTCAGCTCCATCCTCCTTGTTTGGGTGGTACCCCAATTTGAAGACGTTTTCA
AAGGTTTTGGCGCGGAGCTTCCTGCATTTACACAGATGATCGTCAACGCTTCGCGATTCATGGTTGCGTGGTGGTGGCTC
CTTTTGATTGTATTAGTAGGAAGTATCACTGGCTTTATATTCGCTTATAAACGCTCGCCTGGTATGCAACACGGCATGGA
CCGCCTGATCTTGAAGCCCCCCGTCCTAGGCCAAATAATGCATAACAGCTCGATAGCCCGATTTGCCCGTACGACGGCGG
TGACATTCAAGGCTGGCGTGCCCTTGGTAGAGGCGCTGAGCATCGTTGCAGGTGCGACAGGCAATTCGGTCTATGAGAAG
GCTGTGTTACGTATGCGCGACGACGTTTCAGTCGGCTATCCAGTCAACGTGGCAATGAAACAGGTCAATCTGTTCCCGCA
TATGGTTGTACAGATGACTTCAATCGGTGAGGAGGCCGGCGCATTGGATGCGATGCTATTCAAGGTAGCCGAATACTTCG
AACAAGAAGTCAACAATGCTGTCGATGCATTGAGCAGCTTGCTAGAACCCATCATCATGGTATTCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTTAAGCTCGCTTCGGTAGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Legionella pneumophila strain ERS1305867

51.759

94.988

0.492
  pilC Acinetobacter baylyi ADP1

51.385

94.749

0.487
  pilC Acinetobacter baumannii D1279779

51.385

94.749

0.487
  pilG Neisseria gonorrhoeae MS11

43.035

95.943

0.413
  pilG Neisseria meningitidis 44/76-A

42.432

96.181

0.408
  pilC Vibrio cholerae strain A1552

41.206

94.988

0.391
  pilC Vibrio campbellii strain DS40M4

38.916

96.897

0.377

Multiple sequence alignment