Detailed information NTG1039587

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABQY74_RS15345
• Genome accession: NZ_CP167821
• Coordinates: 3586481..3587875 (+)
• Length: 464 a.a.
• NCBI ID: WP_016901261.1
• Uniprot ID: -
• Organism: Xanthomonas sp. WHRI 7064
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3581481..3592875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQY74_RS15330 (ABQY74_015330)	sucD	3582374..3583249 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
ABQY74_RS15335 (ABQY74_015335)	sucC	3583274..3584443 (-)	1170	WP_039519379.1	ADP-forming succinate--CoA ligase subunit beta	-
ABQY74_RS15340 (ABQY74_015340)	-	3584675..3586288 (+)	1614	WP_016901263.1	PAS domain-containing sensor histidine kinase	-
ABQY74_RS15345 (ABQY74_015345)	pilR	3586481..3587875 (+)	1395	WP_016901261.1	sigma-54 dependent transcriptional regulator	Regulator
ABQY74_RS15350 (ABQY74_015350)	pilB	3588335..3590068 (-)	1734	WP_349792116.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABQY74_RS15355 (ABQY74_015355)	-	3590253..3590657 (-)	405	WP_043088084.1	pilin	-
ABQY74_RS15360 (ABQY74_015360)	pilC	3591035..3592294 (+)	1260	WP_349792119.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50204.60 Da
• Isoelectric Point: 6.5112

>NTDB_id=1039587 ABQY74_RS15345 WP_016901261.1 3586481..3587875(+) (pilR) [Xanthomonas sp. WHRI 7064]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=1039587 ABQY74_RS15345 WP_016901261.1 3586481..3587875(+) (pilR) [Xanthomonas sp. WHRI 7064]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCAGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCTGACGGCAACGGCATCGAGCTGGTTACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCTTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTACTGCGTGGCCTGGTCAAGCATGCGCTGGAATTGAATAACCGCGACCGCCCGGCCCCGCCACCGCCAC
CGCCGGAACAGGCCAGCCGCCTGCTGGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGT
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCGCGCACCATCCACGAACAGGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGTTGCGCGCGATCCAGGAAAAATCAGTGCGCCCGGTGGGCGC
GTCCAGCGAGTCGCTGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATACTAGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTCGCCGCCACCCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCAGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	48.922	100	0.489