Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACCO40_RS09295 Genome accession   NZ_CP167793
Coordinates   1789195..1790445 (+) Length   416 a.a.
NCBI ID   WP_087987082.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1784195..1795445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS09265 (ACCO40_09265) yfmH 1784274..1785560 (+) 1287 WP_372402723.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACCO40_RS09270 (ACCO40_09270) ymfI 1785614..1786342 (+) 729 WP_061187488.1 elongation factor P 5-aminopentanone reductase -
  ACCO40_RS09275 (ACCO40_09275) - 1786423..1786680 (+) 258 WP_003220996.1 DUF3243 domain-containing protein -
  ACCO40_RS09280 (ACCO40_09280) - 1786810..1787601 (+) 792 WP_003220998.1 YmfK family protein -
  ACCO40_RS09285 (ACCO40_09285) rodZ 1787668..1788546 (+) 879 WP_372402788.1 cell shape determination protein RodZ -
  ACCO40_RS09290 (ACCO40_09290) pgsA 1788596..1789177 (+) 582 WP_014113836.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACCO40_RS09295 (ACCO40_09295) cinA 1789195..1790445 (+) 1251 WP_087987082.1 competence/damage-inducible protein A Machinery gene
  ACCO40_RS09300 (ACCO40_09300) recA 1790618..1791664 (+) 1047 WP_014113838.1 recombinase RecA Machinery gene
  ACCO40_RS09305 (ACCO40_09305) - 1791833..1793008 (+) 1176 WP_087987081.1 serine hydrolase -
  ACCO40_RS09310 (ACCO40_09310) rny 1793284..1794846 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45651.04 Da        Isoelectric Point: 5.3834

>NTDB_id=1039415 ACCO40_RS09295 WP_087987082.1 1789195..1790445(+) (cinA) [Bacillus spizizenii strain SHT-15]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRQLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKSITISAAESFTGGLFSEWLTDLSGASKRFAGGVVCYTNDMKQNVLG
VKKETLDQFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRMGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1039415 ACCO40_RS09295 WP_087987082.1 1789195..1790445(+) (cinA) [Bacillus spizizenii strain SHT-15]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTATTGCTTGGCCAGATCGCCAATACAAATGCTCA
ATTTATTAGCAAACAGCTCGCTGAAATCGGAGTGAACGTATTTTATCATACAGCAGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATGCGCTGGGACGTCAGCTTGTGTTAAATGATGAGGCGTTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGGACGATGTCACCTAATAATCGAAAACAGGCGCTTGTAATCGAAGGATCTGACGTACTGGCAAATC
ACTTTGGAATGGCACCGGGAATGCTCACAGAACATGAATCGCGCTTTTATATGCTTCTTCCTGGACCGCCAAGCGAATTG
CGTCCCATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATTGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAACCCGACAATCG
CTCCTTTGGCGGCAGATGGAGAGGTGACGTTGCGTCTGACAGCCAAGCATGCTGACGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCTGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAAGCATTACGATTTCCGCGGCGGAAAGTTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAAAACGATTTGCCGGCGGCGTCGTTTGCTATACAAACGACATGAAGCAGAATGTGCTTGGC
GTTAAGAAGGAAACATTAGATCAATTTGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGTAGCGACATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATCGGTATTTCAGCTAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAATGGGAATCAGAAAACGC
GGTGCCAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

97.356

100

0.974
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

40.409

93.99

0.38

Multiple sequence alignment