Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACDJ02_RS15080 Genome accession   NZ_CP167777
Coordinates   3186463..3187689 (+) Length   408 a.a.
NCBI ID   WP_004994255.1    Uniprot ID   A0A2N6VGW1
Organism   Acinetobacter ursingii strain E5131942     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3181463..3192689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS15045 (ACDJ02_15045) rimP 3182012..3182536 (-) 525 WP_151724394.1 ribosome maturation factor RimP -
  ACDJ02_RS15065 (ACDJ02_15065) secG 3183222..3183551 (-) 330 WP_125269307.1 preprotein translocase subunit SecG -
  ACDJ02_RS15070 (ACDJ02_15070) tpiA 3183561..3184358 (-) 798 WP_151724393.1 triose-phosphate isomerase -
  ACDJ02_RS15075 (ACDJ02_15075) pilB 3184801..3186432 (+) 1632 WP_372376521.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACDJ02_RS15080 (ACDJ02_15080) pilC 3186463..3187689 (+) 1227 WP_004994255.1 type II secretion system F family protein Machinery gene
  ACDJ02_RS15085 (ACDJ02_15085) pilD 3187689..3188549 (+) 861 WP_151724660.1 A24 family peptidase Machinery gene
  ACDJ02_RS15090 (ACDJ02_15090) coaE 3188552..3189145 (+) 594 WP_151724661.1 dephospho-CoA kinase -
  ACDJ02_RS15095 (ACDJ02_15095) - 3189127..3190050 (-) 924 WP_151724662.1 DMT family transporter -
  ACDJ02_RS15100 (ACDJ02_15100) rlmB 3190091..3190840 (-) 750 WP_151724663.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACDJ02_RS15105 (ACDJ02_15105) - 3190960..3191286 (-) 327 WP_004991681.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45144.77 Da        Isoelectric Point: 9.9736

>NTDB_id=1039330 ACDJ02_RS15080 WP_004994255.1 3186463..3187689(+) (pilC) [Acinetobacter ursingii strain E5131942]
MAIQKTQMMPTFAYEGVDRKGGKIVGELSARNIALAKVTLRKQGITIKTIRQKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLILSFEIVAEGLENPAMREVVINLKREVEGGSTFADALRKYPQYFDSLFCSLVESGEISGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVIVVAVIVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQSYWFIMIIGIGVVIA
VFLETKKRSKKFRNALDRMALKLPIFGDLIYKSIIARYSRTLATTFAAGVPLIDALKSTAGATNNVIYEDAVMKIREDVA
TGQQLQFAMKTSNLFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1039330 ACDJ02_RS15080 WP_004994255.1 3186463..3187689(+) (pilC) [Acinetobacter ursingii strain E5131942]
ATGGCAATTCAAAAAACACAAATGATGCCAACTTTTGCTTATGAAGGGGTTGATCGAAAGGGAGGAAAAATTGTAGGAGA
ATTATCCGCAAGAAATATAGCCCTCGCAAAAGTAACTTTGCGTAAGCAAGGTATCACCATTAAGACAATTCGCCAAAAAC
GTAAGAATATTTTAGAAGGGCTATTTAAGAAAAAAGTCACTACATTAGATATTACGATTTTCACGCGACAACTTGCGACC
ATGATGAAAGCAGGTGTTCCTTTAATTCTAAGTTTTGAAATTGTTGCTGAAGGCTTAGAAAACCCAGCGATGCGAGAAGT
AGTAATTAACCTAAAACGTGAAGTTGAAGGAGGAAGTACTTTTGCAGATGCTTTACGCAAATATCCCCAATATTTTGATT
CATTATTTTGTTCTTTAGTGGAATCTGGTGAAATATCTGGTGCGCTTGAAACCATGCTAGATCGTGTCGCGATCTACAAG
GAAAAAAGTGAGCTTTTAAAACAAAAAATCAAAAAAGCCATGAAATACCCGATTACTGTCATTGTTGTTGCAGTGATTGT
CACGATTATTTTGATGGTAAAAGTCGTCCCCGTCTTTCAGGATTTATTTAGCTCATTTGGCGCAGAACTTCCTGCTTTTA
CCCAGATGGTGGTAAATATGTCAAAATGGATGCAATCCTACTGGTTCATTATGATTATAGGAATTGGTGTCGTCATTGCT
GTATTTTTAGAAACAAAGAAACGAAGTAAAAAATTTCGTAACGCCTTAGATAGAATGGCATTAAAACTGCCAATTTTTGG
TGATTTAATCTATAAATCAATTATTGCACGTTATAGCCGCACCCTAGCAACGACTTTTGCCGCAGGTGTACCTTTAATTG
ATGCTCTAAAATCAACTGCAGGTGCCACCAATAATGTGATTTATGAAGATGCTGTTATGAAGATTCGTGAAGATGTTGCC
ACGGGTCAACAACTCCAGTTTGCCATGAAAACATCTAACTTATTTCCATCTATGGCTGTTCAAATGGTTGCCATTGGTGA
AGAATCTGGTGCACTAGATGCCATGCTCGACAAAGTTGCCACGCATTATGAAAATGAAGTCGACAATGCTGTAGACGGAC
TAACCTCCATGATGGAACCTTTGATCATGGCAATTCTCGGCGTACTAGTCGGCGGTCTGGTCATCGCCATGTATCTTCCA
ATTTTCCAGATGGGTTCAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N6VGW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.235

100

0.882
  pilC Acinetobacter baylyi ADP1

81.373

100

0.814
  pilC Pseudomonas stutzeri DSM 10701

61.235

99.265

0.608
  pilC Legionella pneumophila strain ERS1305867

54.02

97.549

0.527
  pilG Neisseria meningitidis 44/76-A

47.118

97.794

0.461
  pilG Neisseria gonorrhoeae MS11

47.118

97.794

0.461
  pilC Vibrio cholerae strain A1552

41.912

100

0.419
  pilC Vibrio campbellii strain DS40M4

40.648

98.284

0.4

Multiple sequence alignment