Detailed information NTG1039331

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACDJ02_RS15085
• Genome accession: NZ_CP167777
• Coordinates: 3187689..3188549 (+)
• Length: 286 a.a.
• NCBI ID: WP_151724660.1
• Uniprot ID: -
• Organism: Acinetobacter ursingii strain E5131942
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3182689..3193549

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDJ02_RS15065 (ACDJ02_15065)	secG	3183222..3183551 (-)	330	WP_125269307.1	preprotein translocase subunit SecG	-
ACDJ02_RS15070 (ACDJ02_15070)	tpiA	3183561..3184358 (-)	798	WP_151724393.1	triose-phosphate isomerase	-
ACDJ02_RS15075 (ACDJ02_15075)	pilB	3184801..3186432 (+)	1632	WP_372376521.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACDJ02_RS15080 (ACDJ02_15080)	pilC	3186463..3187689 (+)	1227	WP_004994255.1	type II secretion system F family protein	Machinery gene
ACDJ02_RS15085 (ACDJ02_15085)	pilD	3187689..3188549 (+)	861	WP_151724660.1	A24 family peptidase	Machinery gene
ACDJ02_RS15090 (ACDJ02_15090)	coaE	3188552..3189145 (+)	594	WP_151724661.1	dephospho-CoA kinase	-
ACDJ02_RS15095 (ACDJ02_15095)	-	3189127..3190050 (-)	924	WP_151724662.1	DMT family transporter	-
ACDJ02_RS15100 (ACDJ02_15100)	rlmB	3190091..3190840 (-)	750	WP_151724663.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACDJ02_RS15105 (ACDJ02_15105)	-	3190960..3191286 (-)	327	WP_004991681.1	pyrimidine/purine nucleoside phosphorylase	-
ACDJ02_RS15110 (ACDJ02_15110)	recN	3191795..3193456 (+)	1662	WP_151724664.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32205.68 Da
• Isoelectric Point: 8.0726

>NTDB_id=1039331 ACDJ02_RS15085 WP_151724660.1 3187689..3188549(+) (pilD) [Acinetobacter ursingii strain E5131942]
MSEILNYFIQTPTALYLAVGIFSLCIGSFLNVVIYRTPKMMERDWHTECQMLLHPDQAIIDQDKLTLSSPPSTCPKCHSR
IRWYQNIPLLSWVFLKGRCSHCQNPISIRYPLVELLTMLCSLMIVAVFGPSLQMLFGMVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINSYSLYVSPTASIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1039331 ACDJ02_RS15085 WP_151724660.1 3187689..3188549(+) (pilD) [Acinetobacter ursingii strain E5131942]
ATGTCCGAAATTCTTAATTATTTTATCCAAACCCCAACTGCGCTTTATCTTGCAGTTGGGATTTTTAGCTTGTGCATTGG
TAGTTTTTTAAATGTTGTGATTTATCGCACGCCAAAAATGATGGAACGGGACTGGCACACTGAGTGCCAGATGTTGTTAC
ATCCTGATCAAGCGATCATTGATCAAGATAAACTGACATTAAGTTCACCACCTTCAACCTGCCCCAAATGCCATAGCCGT
ATTCGTTGGTATCAAAATATTCCATTGCTCAGTTGGGTATTTTTAAAAGGTAGATGTAGCCATTGTCAAAATCCGATTAG
CATCCGTTATCCTTTGGTTGAACTGCTCACGATGCTATGTTCACTGATGATCGTAGCTGTCTTTGGGCCTAGCCTTCAAA
TGCTGTTTGGTATGGTTTTAACTTGGGTGCTTATTGCACTGACATTTATTGATTTTGATACTCAACTGTTACCCGATCGT
TTTACTCTGCCGCTAGCAGCATTAGGTCTAGGGATTAATAGCTATAGTCTTTATGTCTCACCAACCGCCTCGATTTGGGG
CTATCTGATTGGTTTTTTATGTCTGTGGATTGTCTATTATTTATTCAAAATAATCACTGGTAAAGAAGGGATGGGCTATG
GCGATTTTAAGTTACTTGCGGCTCTCGGCGCATGGATGGGACCTTTGATGCTTCCACTGATTGTGCTACTTTCTTCATTG
GTCGGTGCGATTATTGGGATCATTTTACTCAAAATCCGTAAAGAAAATCAGCCATTTGCCTTCGGTCCTTATATCGCTAT
TGCTGGATGGATCGCTTTTTTATGGGGTGAGCAAATTATGAAAGTTTATCTGGGAGGCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80.42	100	0.804
pilD	Acinetobacter baumannii D1279779	79.371	100	0.794
pilD	Vibrio cholerae strain A1552	54.307	93.357	0.507
pilD	Vibrio campbellii strain DS40M4	50.526	99.65	0.503
pilD	Neisseria gonorrhoeae MS11	43.956	95.455	0.42