Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACCP95_RS15275 | Genome accession | NZ_CP167219 |
| Coordinates | 3559561..3560817 (+) | Length | 418 a.a. |
| NCBI ID | WP_057685777.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. fici strain NCPPB 3795 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3554561..3565817
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCP95_RS15255 (ACCP95_15255) | pilR | 3554806..3556260 (+) | 1455 | WP_218488478.1 | sigma-54 dependent transcriptional regulator | Regulator |
| ACCP95_RS15260 (ACCP95_15260) | pilB | 3556482..3558218 (-) | 1737 | WP_022558667.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACCP95_RS15265 (ACCP95_15265) | - | 3558282..3558716 (-) | 435 | WP_078590286.1 | pilin | - |
| ACCP95_RS15270 (ACCP95_15270) | pilE | 3558794..3559234 (-) | 441 | WP_078590287.1 | pilin | Machinery gene |
| ACCP95_RS15275 (ACCP95_15275) | pilC | 3559561..3560817 (+) | 1257 | WP_057685777.1 | type II secretion system F family protein | Machinery gene |
| ACCP95_RS15280 (ACCP95_15280) | - | 3560824..3561687 (+) | 864 | WP_122272419.1 | A24 family peptidase | - |
| ACCP95_RS15285 (ACCP95_15285) | coaE | 3561701..3562312 (+) | 612 | WP_007973907.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45925.32 Da Isoelectric Point: 10.3003
>NTDB_id=1038931 ACCP95_RS15275 WP_057685777.1 3559561..3560817(+) (pilC) [Xanthomonas campestris pv. fici strain NCPPB 3795]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV
Nucleotide
Download Length: 1257 bp
>NTDB_id=1038931 ACCP95_RS15275 WP_057685777.1 3559561..3560817(+) (pilC) [Xanthomonas campestris pv. fici strain NCPPB 3795]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAACGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAAGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGCGCAGAGCTTCGTCGTC
AGGGAATCACGCCCACAGTTGTAAAGACTAAACCAAAACCACTTTTCGGCGCTGCGGGCAAAAAAATTTCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCCGGAGTCCCCATCGTTGGCGCACTTGAGATTATCGGTGA
GGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAACCTGGTTCGCGCGGGCGAAGGCGCTGGCGTATTGGAA
ACTGTTCTAGATACAGTTGCGAACTATAAAGAAAATATCGAAGCCCTTAAAGGCAAAATCAAAAAAGCCCTGTTTTATCC
CGCCATGGTAATGGCCGTCGCAATTATTGTCAGCGGCATCCTCCTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AGGGATTTGGAGCAGAGCTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCGAGTGTCGCAGCGATAGCCGGTTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTCTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAACAGCTCCATTGCTCGATTTGCCCGAACCACGGCGG
TCACATTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGCATTGTTGCCGGCGCGACTGGCAACAAGGTCTATGAGGAA
GCTGTACTGCGGATGCGCGACGACGTCTCTGTGGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTTCCTCA
TATGGTGGTTCAAATGACATCCATTGGCGAGGAAGCGGGCGCTCTTGATGCCATGCTATTTAAAGTAGCCGAGTATTTTG
AGCAGGAAGTGAATAACGCCGTGGACGCGCTGAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGTATGGTGATCGGCATGTATCTCCCAATTTTCAAACTTGGCTCGGTGGTATAA
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAACGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAAGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGCGCAGAGCTTCGTCGTC
AGGGAATCACGCCCACAGTTGTAAAGACTAAACCAAAACCACTTTTCGGCGCTGCGGGCAAAAAAATTTCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCCGGAGTCCCCATCGTTGGCGCACTTGAGATTATCGGTGA
GGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAACCTGGTTCGCGCGGGCGAAGGCGCTGGCGTATTGGAA
ACTGTTCTAGATACAGTTGCGAACTATAAAGAAAATATCGAAGCCCTTAAAGGCAAAATCAAAAAAGCCCTGTTTTATCC
CGCCATGGTAATGGCCGTCGCAATTATTGTCAGCGGCATCCTCCTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AGGGATTTGGAGCAGAGCTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCGAGTGTCGCAGCGATAGCCGGTTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTCTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAACAGCTCCATTGCTCGATTTGCCCGAACCACGGCGG
TCACATTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGCATTGTTGCCGGCGCGACTGGCAACAAGGTCTATGAGGAA
GCTGTACTGCGGATGCGCGACGACGTCTCTGTGGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTTCCTCA
TATGGTGGTTCAAATGACATCCATTGGCGAGGAAGCGGGCGCTCTTGATGCCATGCTATTTAAAGTAGCCGAGTATTTTG
AGCAGGAAGTGAATAACGCCGTGGACGCGCTGAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGTATGGTGATCGGCATGTATCTCCCAATTTTCAAACTTGGCTCGGTGGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baylyi ADP1 |
52.854 |
96.411 |
0.51 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.535 |
94.737 |
0.507 |
| pilC | Acinetobacter baumannii D1279779 |
51.861 |
96.411 |
0.5 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.232 |
97.129 |
0.498 |
| pilG | Neisseria gonorrhoeae MS11 |
45.5 |
95.694 |
0.435 |
| pilG | Neisseria meningitidis 44/76-A |
45 |
95.694 |
0.431 |
| pilC | Vibrio cholerae strain A1552 |
42.677 |
94.737 |
0.404 |
| pilC | Vibrio campbellii strain DS40M4 |
39.646 |
94.737 |
0.376 |
| pilC | Thermus thermophilus HB27 |
37.94 |
95.215 |
0.361 |