Detailed information NTG1037552

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: AD178_RS07400
• Genome accession: NZ_OX244288
• Coordinates: 1456076..1456546 (-)
• Length: 156 a.a.
• NCBI ID: WP_000609607.1
• Uniprot ID: P66854
• Organism: Streptococcus pneumoniae strain PT8105 isolate 2RLC4
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1451076..1461546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AD178_RS07370 (SAMEA1463109_01490)	-	1451651..1452586 (-)	936	WP_000036043.1	manganese-dependent inorganic pyrophosphatase	-
AD178_RS07375 (SAMEA1463109_01491)	-	1452657..1452956 (-)	300	WP_000349601.1	GIY-YIG nuclease family protein	-
AD178_RS07380 (SAMEA1463109_01492)	-	1452946..1453695 (-)	750	WP_000390783.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
AD178_RS07385 (SAMEA1463109_01493)	-	1453749..1454108 (-)	360	WP_000689596.1	S1 RNA-binding domain-containing protein	-
AD178_RS07390 (SAMEA1463109_01494)	-	1454110..1455510 (-)	1401	WP_000339028.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
AD178_RS07395 (SAMEA1463109_01495)	rpsR	1455805..1456044 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
AD178_RS07400 (SAMEA1463109_01496)	ssbA	1456076..1456546 (-)	471	WP_000609607.1	single-stranded DNA-binding protein SsbA	Machinery gene
AD178_RS07405 (SAMEA1463109_01497)	rpsF	1456558..1456848 (-)	291	WP_001151785.1	30S ribosomal protein S6	-
AD178_RS07410 (SAMEA1463109_01498)	-	1457130..1458128 (+)	999	Protein_1470	ISL3 family transposase	-
AD178_RS07415 (SAMEA1463109_01499)	-	1458250..1459506 (+)	1257	WP_000436180.1	ISL3-like element IS1167A family transposase	-
AD178_RS07420	-	1459540..1459809 (+)	270	Protein_1472	ISL3 family transposase	-
AD178_RS07425 (SAMEA1463109_01500)	asnS	1459847..1461193 (-)	1347	WP_161801414.1	asparagine--tRNA ligase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17351.21 Da
• Isoelectric Point: 5.2065

>NTDB_id=1037552 AD178_RS07400 WP_000609607.1 1456076..1456546(-) (ssbA) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=1037552 AD178_RS07400 WP_000609607.1 1456076..1456546(-) (ssbA) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGCCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: P66854

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.814	100	0.615
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.59
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae TIGR4	53.211	69.872	0.372
ssbB/cilA	Streptococcus mitis SK321	52.294	69.872	0.365
ssbB/cilA	Streptococcus mitis NCTC 12261	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae Rx1	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae D39	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae R6	52.294	69.872	0.365