Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACAY00_RS11200 | Genome accession | NZ_CP166961 |
| Coordinates | 2503369..2504613 (+) | Length | 414 a.a. |
| NCBI ID | WP_371373520.1 | Uniprot ID | - |
| Organism | Thalassotalea aquiviva strain 273M-4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2498369..2509613
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAY00_RS11180 | - | 2498395..2498913 (+) | 519 | WP_371373508.1 | TIGR02281 family clan AA aspartic protease | - |
| ACAY00_RS11185 | nadC | 2499017..2499892 (+) | 876 | WP_371373511.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACAY00_RS11190 | - | 2500933..2501397 (+) | 465 | WP_371373514.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| ACAY00_RS11195 | pilB | 2501658..2503352 (+) | 1695 | WP_371373517.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACAY00_RS11200 | pilC | 2503369..2504613 (+) | 1245 | WP_371373520.1 | type II secretion system F family protein | Machinery gene |
| ACAY00_RS11205 | pilD | 2504663..2505562 (+) | 900 | WP_371373523.1 | prepilin peptidase | Machinery gene |
| ACAY00_RS11210 | coaE | 2505568..2506173 (+) | 606 | WP_371373527.1 | dephospho-CoA kinase | - |
| ACAY00_RS11215 | - | 2506311..2507057 (+) | 747 | WP_371373530.1 | cell division protein ZapD | - |
| ACAY00_RS11220 | - | 2507068..2508849 (-) | 1782 | WP_371373533.1 | Wzy polymerase domain-containing protein | - |
Sequence
Protein
Download Length: 414 a.a. Molecular weight: 44351.29 Da Isoelectric Point: 9.1595
>NTDB_id=1036343 ACAY00_RS11200 WP_371373520.1 2503369..2504613(+) (pilC) [Thalassotalea aquiviva strain 273M-4]
MATASAKQSKKTQDVFLFTWSGVNRKGKKVNGELSAPNALELKAQLRKQGITPLRVKKKPKPLFGMSGEKSIKPVDIAIV
TRQLATMLSAGVPLVQSIEMIGKGSDNGNIRKLLAEVGSKLQGGVPLSQCLRDHPKYFDGLYCDLVESGEQSGALESIYD
RIATYKEKAEALKAKIKKALVYPVAVICVAVIVTSILLIAVVPTFVEVFASFDAELPAFTLMVVNLSDFMVANWHIALSG
IVGIFIAIKKTHEKSAKFRDKVDAILLKAPVIGMILNKAAVARFSRTLSTTFAAGVPLIDALDSAAGASGNAVYRDAIKE
IRTEVSGGMQMNLAMRNADVFPDMVIQMVSIGEESGALDDMLAKVANVYEQEVDDAVDGLTALLEPLIMAVLGVLIGGLI
IAMYLPIFQIGAVI
MATASAKQSKKTQDVFLFTWSGVNRKGKKVNGELSAPNALELKAQLRKQGITPLRVKKKPKPLFGMSGEKSIKPVDIAIV
TRQLATMLSAGVPLVQSIEMIGKGSDNGNIRKLLAEVGSKLQGGVPLSQCLRDHPKYFDGLYCDLVESGEQSGALESIYD
RIATYKEKAEALKAKIKKALVYPVAVICVAVIVTSILLIAVVPTFVEVFASFDAELPAFTLMVVNLSDFMVANWHIALSG
IVGIFIAIKKTHEKSAKFRDKVDAILLKAPVIGMILNKAAVARFSRTLSTTFAAGVPLIDALDSAAGASGNAVYRDAIKE
IRTEVSGGMQMNLAMRNADVFPDMVIQMVSIGEESGALDDMLAKVANVYEQEVDDAVDGLTALLEPLIMAVLGVLIGGLI
IAMYLPIFQIGAVI
Nucleotide
Download Length: 1245 bp
>NTDB_id=1036343 ACAY00_RS11200 WP_371373520.1 2503369..2504613(+) (pilC) [Thalassotalea aquiviva strain 273M-4]
ATGGCAACAGCAAGTGCAAAACAAAGCAAAAAAACGCAAGATGTTTTTCTTTTTACTTGGTCTGGGGTAAACAGAAAAGG
TAAAAAAGTAAACGGTGAGCTTTCTGCTCCCAACGCGCTGGAGCTCAAAGCGCAACTAAGAAAACAAGGTATTACCCCAC
TTCGCGTTAAAAAGAAACCCAAACCACTGTTTGGCATGAGTGGCGAAAAATCGATTAAGCCGGTCGATATTGCTATTGTC
ACTAGGCAACTTGCTACTATGTTAAGTGCCGGTGTACCTTTAGTACAATCGATTGAGATGATTGGTAAAGGCAGTGATAA
CGGCAATATTCGAAAGCTCCTCGCTGAAGTGGGTAGTAAACTTCAAGGTGGTGTGCCCTTATCACAATGCTTACGCGATC
ACCCCAAATATTTTGATGGCTTATATTGCGATTTGGTTGAATCGGGTGAACAATCTGGCGCGCTTGAAAGCATTTACGAC
AGGATTGCTACTTATAAAGAAAAAGCCGAAGCGTTAAAGGCTAAAATTAAAAAAGCTTTAGTTTATCCTGTTGCGGTTAT
TTGTGTTGCGGTCATTGTTACTTCTATTTTGTTAATTGCTGTTGTACCAACATTTGTTGAAGTATTTGCCAGCTTTGATG
CCGAACTGCCCGCCTTTACACTAATGGTGGTTAACTTATCTGATTTTATGGTAGCCAATTGGCATATTGCGCTCTCCGGT
ATTGTGGGCATTTTTATAGCGATTAAAAAGACCCATGAAAAAAGCGCCAAATTTCGAGACAAAGTCGATGCCATCTTATT
AAAAGCCCCAGTCATTGGGATGATCCTAAATAAAGCTGCCGTTGCTCGCTTTAGCCGAACATTATCGACCACGTTTGCTG
CTGGTGTGCCATTAATTGATGCCCTAGATTCTGCTGCCGGCGCTTCTGGCAATGCGGTGTATCGCGATGCGATAAAAGAG
ATCCGCACCGAAGTTTCAGGCGGTATGCAAATGAATTTAGCGATGAGAAATGCTGATGTATTTCCCGATATGGTGATTCA
AATGGTGTCCATTGGTGAGGAATCTGGTGCCCTAGATGACATGCTGGCAAAAGTTGCCAATGTTTATGAGCAAGAAGTAG
ATGATGCCGTTGACGGCTTAACCGCGTTATTAGAACCCTTAATTATGGCTGTTTTAGGCGTACTTATTGGTGGTTTGATC
ATTGCCATGTATTTACCAATATTCCAAATTGGTGCTGTGATCTAA
ATGGCAACAGCAAGTGCAAAACAAAGCAAAAAAACGCAAGATGTTTTTCTTTTTACTTGGTCTGGGGTAAACAGAAAAGG
TAAAAAAGTAAACGGTGAGCTTTCTGCTCCCAACGCGCTGGAGCTCAAAGCGCAACTAAGAAAACAAGGTATTACCCCAC
TTCGCGTTAAAAAGAAACCCAAACCACTGTTTGGCATGAGTGGCGAAAAATCGATTAAGCCGGTCGATATTGCTATTGTC
ACTAGGCAACTTGCTACTATGTTAAGTGCCGGTGTACCTTTAGTACAATCGATTGAGATGATTGGTAAAGGCAGTGATAA
CGGCAATATTCGAAAGCTCCTCGCTGAAGTGGGTAGTAAACTTCAAGGTGGTGTGCCCTTATCACAATGCTTACGCGATC
ACCCCAAATATTTTGATGGCTTATATTGCGATTTGGTTGAATCGGGTGAACAATCTGGCGCGCTTGAAAGCATTTACGAC
AGGATTGCTACTTATAAAGAAAAAGCCGAAGCGTTAAAGGCTAAAATTAAAAAAGCTTTAGTTTATCCTGTTGCGGTTAT
TTGTGTTGCGGTCATTGTTACTTCTATTTTGTTAATTGCTGTTGTACCAACATTTGTTGAAGTATTTGCCAGCTTTGATG
CCGAACTGCCCGCCTTTACACTAATGGTGGTTAACTTATCTGATTTTATGGTAGCCAATTGGCATATTGCGCTCTCCGGT
ATTGTGGGCATTTTTATAGCGATTAAAAAGACCCATGAAAAAAGCGCCAAATTTCGAGACAAAGTCGATGCCATCTTATT
AAAAGCCCCAGTCATTGGGATGATCCTAAATAAAGCTGCCGTTGCTCGCTTTAGCCGAACATTATCGACCACGTTTGCTG
CTGGTGTGCCATTAATTGATGCCCTAGATTCTGCTGCCGGCGCTTCTGGCAATGCGGTGTATCGCGATGCGATAAAAGAG
ATCCGCACCGAAGTTTCAGGCGGTATGCAAATGAATTTAGCGATGAGAAATGCTGATGTATTTCCCGATATGGTGATTCA
AATGGTGTCCATTGGTGAGGAATCTGGTGCCCTAGATGACATGCTGGCAAAAGTTGCCAATGTTTATGAGCAAGAAGTAG
ATGATGCCGTTGACGGCTTAACCGCGTTATTAGAACCCTTAATTATGGCTGTTTTAGGCGTACTTATTGGTGGTTTGATC
ATTGCCATGTATTTACCAATATTCCAAATTGGTGCTGTGATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
61.558 |
96.135 |
0.592 |
| pilC | Acinetobacter baylyi ADP1 |
54.433 |
98.068 |
0.534 |
| pilC | Acinetobacter baumannii D1279779 |
53.827 |
97.826 |
0.527 |
| pilC | Legionella pneumophila strain ERS1305867 |
49.383 |
97.826 |
0.483 |
| pilG | Neisseria gonorrhoeae MS11 |
44.526 |
99.275 |
0.442 |
| pilG | Neisseria meningitidis 44/76-A |
46.667 |
94.203 |
0.44 |
| pilC | Vibrio cholerae strain A1552 |
44.472 |
98.309 |
0.437 |
| pilC | Vibrio campbellii strain DS40M4 |
43.86 |
96.377 |
0.423 |