Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACAX20_RS02035 Genome accession   NZ_CP166919
Coordinates   463706..464956 (-) Length   416 a.a.
NCBI ID   WP_371188163.1    Uniprot ID   -
Organism   Thalassotalea maritima strain Sam97     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458706..469956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAX20_RS02010 yacG 459228..459464 (-) 237 WP_371188155.1 DNA gyrase inhibitor YacG -
  ACAX20_RS02015 - 459527..461209 (+) 1683 WP_371188157.1 Wzy polymerase domain-containing protein -
  ACAX20_RS02020 - 461216..461962 (-) 747 WP_371188159.1 cell division protein ZapD -
  ACAX20_RS02025 coaE 462073..462687 (-) 615 WP_371189552.1 dephospho-CoA kinase -
  ACAX20_RS02030 pilD 462731..463615 (-) 885 WP_371188161.1 A24 family peptidase Machinery gene
  ACAX20_RS02035 pilC 463706..464956 (-) 1251 WP_371188163.1 type II secretion system F family protein Machinery gene
  ACAX20_RS02040 pilB 464982..466679 (-) 1698 WP_371188165.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACAX20_RS02045 - 466774..467184 (-) 411 WP_371188167.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACAX20_RS02050 - 467229..467654 (-) 426 WP_371188169.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACAX20_RS02055 nadC 468275..469168 (-) 894 WP_371188171.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44842.64 Da        Isoelectric Point: 7.8183

>NTDB_id=1036195 ACAX20_RS02035 WP_371188163.1 463706..464956(-) (pilC) [Thalassotalea maritima strain Sam97]
MALAQQTKKVAKAKPLDLFEWQGVNTKGKKVKGEMPGSNVMEVKAQLRKQGITPSRTRKKPKPFLGLGGGDKPIKPADMA
IVTRQIATMLNAGVPLVQSIEMIGKGNDNGNIRKLLGEIGNQVQSGLPLSTCLREHPKYFDELYCDLVQSGEQSGALEAI
FDRIALYKEKAEALKSKIKKAMFYPVAVLVVAAIVTSILLIFVVPTFVDIFASFDAELPAFTQFVIGISDFMVAYWYIAL
AAIFGGGWMFKQAHGKSQDLRDKVDTAVLKLPVIGEILNKAAVARFARTLSTTFAAGVPLIDALDSASGAAGNAVYRNAI
RDIRVEVSSGMQMNLAMRNADVFPDMVVQMVTIGEESGALDDMLAKVATVYEQEVDDAVDGLTSLLEPLIMAVLGVVIGG
LIIAMYLPIFELGAVV

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1036195 ACAX20_RS02035 WP_371188163.1 463706..464956(-) (pilC) [Thalassotalea maritima strain Sam97]
ATGGCATTAGCGCAACAAACAAAAAAAGTAGCTAAAGCAAAGCCGCTTGACCTATTCGAATGGCAGGGGGTGAATACCAA
AGGCAAAAAAGTCAAAGGCGAAATGCCAGGCAGCAATGTTATGGAAGTTAAAGCACAACTTCGCAAACAGGGTATTACAC
CGTCTAGAACACGTAAAAAACCCAAACCATTTCTGGGTCTTGGTGGTGGCGATAAACCAATCAAACCTGCAGATATGGCC
ATTGTTACGAGACAAATAGCAACAATGCTTAATGCGGGTGTTCCTTTAGTACAAAGTATTGAAATGATTGGCAAGGGTAA
TGATAATGGCAATATTCGCAAACTGCTTGGAGAAATAGGTAACCAAGTGCAATCTGGCTTACCACTTTCTACTTGTTTAC
GTGAACATCCGAAATATTTTGATGAGCTATATTGTGACCTAGTGCAATCTGGTGAACAATCTGGTGCCCTAGAAGCAATA
TTCGATAGAATAGCTCTTTATAAGGAGAAAGCAGAAGCATTAAAATCAAAAATCAAAAAAGCGATGTTTTACCCTGTGGC
AGTATTAGTCGTTGCTGCGATTGTAACTTCTATCCTATTGATTTTTGTCGTACCAACCTTTGTTGACATTTTTGCTAGCT
TTGATGCTGAATTACCTGCTTTTACACAGTTTGTTATAGGCATATCTGATTTTATGGTGGCCTATTGGTATATCGCGCTT
GCAGCTATTTTCGGCGGTGGGTGGATGTTTAAACAAGCTCATGGAAAAAGCCAAGACTTGCGTGATAAAGTTGACACGGC
AGTTTTAAAACTCCCAGTTATTGGCGAAATCCTAAACAAGGCAGCCGTTGCGCGTTTTGCTCGGACATTGTCCACCACCT
TTGCAGCCGGTGTCCCATTAATTGACGCGCTAGATTCCGCCTCAGGCGCTGCTGGTAATGCTGTTTATCGCAATGCTATA
CGAGATATAAGAGTTGAGGTGTCCTCTGGTATGCAAATGAACTTGGCAATGCGTAACGCCGATGTATTTCCTGATATGGT
AGTGCAAATGGTAACTATAGGTGAGGAGTCTGGTGCATTAGATGATATGCTTGCCAAGGTTGCAACCGTCTATGAGCAAG
AAGTTGACGATGCAGTAGATGGTTTAACATCACTGCTAGAGCCCCTTATTATGGCCGTGCTTGGTGTTGTCATCGGTGGC
CTGATCATCGCAATGTACTTGCCAATATTCGAACTAGGCGCAGTTGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)

Type II secretion system (T2SS), protein F (T2SSF)

(83-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.753

97.356

0.582
  pilC Acinetobacter baumannii D1279779

53.563

97.837

0.524
  pilC Acinetobacter baylyi ADP1

53.58

97.356

0.522
  pilC Legionella pneumophila strain ERS1305867

51.244

96.635

0.495
  pilC Vibrio cholerae strain A1552

43.171

98.558

0.425
  pilG Neisseria meningitidis 44/76-A

43.596

97.596

0.425
  pilG Neisseria gonorrhoeae MS11

43.103

97.596

0.421
  pilC Vibrio campbellii strain DS40M4

41.422

98.077

0.406

Multiple sequence alignment