Detailed information NTG1036194

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACAX20_RS02030
• Genome accession: NZ_CP166919
• Coordinates: 462731..463615 (-)
• Length: 294 a.a.
• NCBI ID: WP_371188161.1
• Uniprot ID: -
• Organism: Thalassotalea maritima strain Sam97
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 457731..468615

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACAX20_RS02005	-	458195..459076 (+)	882	WP_371188153.1	LysR substrate-binding domain-containing protein	-
ACAX20_RS02010	yacG	459228..459464 (-)	237	WP_371188155.1	DNA gyrase inhibitor YacG	-
ACAX20_RS02015	-	459527..461209 (+)	1683	WP_371188157.1	Wzy polymerase domain-containing protein	-
ACAX20_RS02020	-	461216..461962 (-)	747	WP_371188159.1	cell division protein ZapD	-
ACAX20_RS02025	coaE	462073..462687 (-)	615	WP_371189552.1	dephospho-CoA kinase	-
ACAX20_RS02030	pilD	462731..463615 (-)	885	WP_371188161.1	A24 family peptidase	Machinery gene
ACAX20_RS02035	pilC	463706..464956 (-)	1251	WP_371188163.1	type II secretion system F family protein	Machinery gene
ACAX20_RS02040	pilB	464982..466679 (-)	1698	WP_371188165.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACAX20_RS02045	-	466774..467184 (-)	411	WP_371188167.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACAX20_RS02050	-	467229..467654 (-)	426	WP_371188169.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 32834.35 Da
• Isoelectric Point: 7.1242

>NTDB_id=1036194 ACAX20_RS02030 WP_371188161.1 462731..463615(-) (pilD) [Thalassotalea maritima strain Sam97]
MFTDVLSLFEQQPAVYYTTITILGLLIGSFLNVVIYRLPKMLEQEWACECREFLADEIDKKKIKPTEQVTLSKPASTCPH
CGHKIRAWENIPVISWLFLRGKCSSCAKPISARYPIIELVTGIASLIVVSYYGVSVQAAVMLVLTWCLIALTMIDFDKMI
LPDQITLPLVWLGLILGLFNVFVPLEQAVIGAIVGYMSLWSVFWLFKLITGKEGMGYGDFKLFAVFGAWFGWQLLPLLIL
MASLVGAIVGISMMVLSNHERSKPIPFGPYLAVAGWITALWGEGIWAWYIGLIG

Nucleotide

• Length: 885 bp

>NTDB_id=1036194 ACAX20_RS02030 WP_371188161.1 462731..463615(-) (pilD) [Thalassotalea maritima strain Sam97]
GTGTTCACTGACGTTTTATCTCTATTCGAACAGCAACCTGCTGTTTATTATACTACCATCACTATTTTAGGTTTGCTTAT
TGGCTCATTTTTAAATGTGGTGATTTATCGTTTACCAAAAATGCTCGAACAAGAATGGGCATGTGAATGTCGCGAATTTT
TAGCCGATGAAATCGATAAGAAGAAAATTAAGCCTACGGAGCAAGTCACCCTATCAAAACCAGCATCAACTTGCCCGCAC
TGTGGACATAAAATTCGCGCTTGGGAAAATATTCCGGTTATCTCTTGGTTGTTTTTACGCGGTAAATGCTCCTCTTGCGC
TAAGCCAATCTCAGCACGCTATCCTATTATTGAACTCGTAACTGGCATTGCCTCACTGATTGTGGTGAGTTATTACGGTG
TGAGTGTACAAGCAGCGGTAATGCTAGTATTAACGTGGTGCTTAATCGCGTTAACCATGATCGACTTTGATAAAATGATT
TTGCCTGATCAAATCACGCTACCGCTGGTGTGGCTTGGCTTGATATTGGGCTTATTCAATGTTTTCGTTCCACTTGAGCA
AGCGGTTATTGGCGCTATTGTTGGCTACATGAGTTTATGGTCAGTATTTTGGCTGTTTAAGTTGATTACTGGCAAAGAAG
GTATGGGCTATGGCGACTTTAAGCTGTTTGCCGTTTTTGGTGCATGGTTTGGCTGGCAGTTATTACCGTTATTGATTTTA
ATGGCATCACTTGTTGGCGCCATTGTCGGCATTAGTATGATGGTATTAAGTAATCATGAGCGTTCAAAGCCAATTCCTTT
TGGTCCCTATTTAGCCGTAGCTGGTTGGATTACCGCATTATGGGGTGAAGGTATTTGGGCTTGGTATATAGGTCTAATAG
GCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (142-251)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.431	97.959	0.514
pilD	Acinetobacter nosocomialis M2	52.083	97.959	0.51
pilD	Vibrio campbellii strain DS40M4	52.098	97.279	0.507
pilD	Vibrio cholerae strain A1552	52.098	97.279	0.507
pilD	Neisseria gonorrhoeae MS11	49.057	90.136	0.442