Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACAY30_RS02300 Genome accession   NZ_CP166871
Coordinates   502701..503945 (-) Length   414 a.a.
NCBI ID   WP_290252427.1    Uniprot ID   -
Organism   Thalassotalea ponticola strain KCTC 42155     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 497701..508945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAY30_RS02270 mutT 498353..498748 (+) 396 WP_290252421.1 8-oxo-dGTP diphosphatase MutT -
  ACAY30_RS02275 - 499010..499531 (-) 522 WP_290252422.1 DUF3465 domain-containing protein -
  ACAY30_RS02280 yacG 499697..499933 (-) 237 WP_290252423.1 DNA gyrase inhibitor YacG -
  ACAY30_RS02285 zapD 500033..500779 (-) 747 WP_290252424.1 cell division protein ZapD -
  ACAY30_RS02290 coaE 500982..501584 (-) 603 WP_290252425.1 dephospho-CoA kinase -
  ACAY30_RS02295 pilD 501701..502606 (-) 906 WP_290252426.1 A24 family peptidase Machinery gene
  ACAY30_RS02300 pilC 502701..503945 (-) 1245 WP_290252427.1 type II secretion system F family protein Machinery gene
  ACAY30_RS02305 pilB 504074..505774 (-) 1701 WP_290252428.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACAY30_RS02310 - 505869..506300 (-) 432 WP_290252429.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACAY30_RS02315 nadC 506956..507849 (-) 894 WP_290252430.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACAY30_RS02320 - 508035..508550 (-) 516 WP_290252431.1 TIGR02281 family clan AA aspartic protease -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44833.84 Da        Isoelectric Point: 8.7806

>NTDB_id=1035801 ACAY30_RS02300 WP_290252427.1 502701..503945(-) (pilC) [Thalassotalea ponticola strain KCTC 42155]
MTVATPQEKTVKPKALDTFQWEGVNRKGKKIKGELAATNAIELKAQLRKQGITPLKHKKKKKSLLSSGDKAITPADIAVI
SRQIATMLTAGVPLVQTIEMIGKGNDNGNIRQLLGDIGNKVQSGLPLSECLRDHPKYFDDLYCDLVQSGEQSGALEAIFG
RIALYKEKAEALKSKIKKALFYPIAVLIVAAIVTSILLIFVVPTFVDIFASFNAELPAFTLFVVGISDFMVAYWYIALAA
VSIVGWLFKRAHLNSQQFRDKVDAYVLKIPVIGMILDKAAVARFARTLSTTFAAGVPLIDALDSAAGASGNAIYREAIKE
IRSEVSAGMQMNLAMRNVNIFPDMVIQMVTIGEESGALDDMLAKVATIYEQEVDDAVDGLTALLEPMIMAVLGVVIGGLI
IAMYLPIFQIGAVI

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1035801 ACAY30_RS02300 WP_290252427.1 502701..503945(-) (pilC) [Thalassotalea ponticola strain KCTC 42155]
ATGACTGTTGCAACCCCACAAGAAAAAACGGTTAAACCTAAAGCACTAGATACCTTTCAGTGGGAAGGGGTTAACCGCAA
AGGTAAAAAAATAAAAGGCGAGCTTGCTGCCACCAACGCAATTGAACTCAAAGCCCAGCTGCGCAAACAAGGCATTACCC
CGTTAAAACACAAAAAGAAGAAAAAATCACTGCTTAGCAGTGGCGATAAAGCCATTACGCCTGCCGATATCGCAGTAATA
TCGAGACAAATCGCTACCATGCTAACCGCTGGTGTACCATTAGTACAAACCATCGAAATGATCGGTAAAGGCAACGACAA
CGGTAACATCCGCCAACTGTTAGGTGACATCGGTAATAAAGTTCAATCTGGCTTACCACTATCAGAGTGTTTGCGCGACC
ATCCAAAATATTTTGATGACTTATATTGTGATTTAGTGCAATCGGGTGAACAATCAGGTGCCTTAGAAGCCATTTTTGGT
CGTATTGCCTTATACAAAGAAAAGGCCGAAGCGTTAAAATCAAAAATTAAAAAAGCGCTATTTTATCCAATTGCGGTACT
GATTGTTGCAGCAATTGTTACCTCAATTTTGTTAATATTTGTGGTACCAACCTTTGTTGATATTTTTGCTAGCTTTAATG
CTGAACTACCTGCTTTCACTTTGTTTGTGGTTGGTATATCTGATTTTATGGTCGCCTATTGGTATATCGCCCTCGCTGCT
GTTTCTATCGTCGGCTGGTTATTCAAACGTGCACATTTAAACAGTCAACAATTTCGCGATAAAGTGGATGCCTACGTATT
AAAGATACCAGTTATCGGTATGATTTTAGATAAGGCCGCGGTAGCCCGCTTTGCCCGTACCCTATCAACCACATTTGCCG
CTGGTGTCCCTTTAATTGACGCCCTTGACTCGGCTGCTGGAGCCTCAGGCAATGCGATATATCGCGAGGCGATAAAAGAG
ATTCGATCTGAAGTATCTGCCGGTATGCAAATGAACCTTGCAATGCGCAACGTGAATATATTTCCCGATATGGTAATTCA
AATGGTGACGATAGGTGAAGAATCGGGCGCCCTCGATGATATGCTAGCTAAGGTAGCCACCATTTACGAGCAAGAAGTAG
ATGATGCCGTTGATGGCTTAACTGCGCTACTTGAGCCAATGATCATGGCGGTTTTAGGCGTAGTGATTGGTGGTTTGATT
ATTGCCATGTACCTGCCGATATTCCAAATCGGTGCCGTAATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(284-406)

Type II secretion system (T2SS), protein F (T2SSF)

(81-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.364

95.652

0.587
  pilC Acinetobacter baumannii D1279779

53.96

97.585

0.527
  pilC Acinetobacter baylyi ADP1

52.709

98.068

0.517
  pilC Legionella pneumophila strain ERS1305867

52.632

96.377

0.507
  pilC Vibrio cholerae strain A1552

45.636

96.86

0.442
  pilG Neisseria meningitidis 44/76-A

44.081

95.894

0.423
  pilG Neisseria gonorrhoeae MS11

43.829

95.894

0.42
  pilC Vibrio campbellii strain DS40M4

42.439

99.034

0.42

Multiple sequence alignment