Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3239_RS09290 Genome accession   NZ_CP166831
Coordinates   1771354..1772604 (+) Length   416 a.a.
NCBI ID   WP_120028097.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1766354..1777604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS09260 (AB3239_09260) yfmH 1766444..1767730 (+) 1287 WP_003244823.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB3239_RS09265 (AB3239_09265) ymfI 1767785..1768513 (+) 729 WP_015483236.1 elongation factor P 5-aminopentanone reductase -
  AB3239_RS09270 (AB3239_09270) ymfJ 1768594..1768851 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  AB3239_RS09275 (AB3239_09275) - 1768981..1769772 (+) 792 WP_003220998.1 YmfK family protein -
  AB3239_RS09280 (AB3239_09280) rodZ 1769839..1770705 (+) 867 WP_370957451.1 cell shape determination protein RodZ -
  AB3239_RS09285 (AB3239_09285) pgsA 1770755..1771336 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3239_RS09290 (AB3239_09290) cinA 1771354..1772604 (+) 1251 WP_120028097.1 competence/damage-inducible protein A Machinery gene
  AB3239_RS09295 (AB3239_09295) recA 1772777..1773823 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  AB3239_RS09300 (AB3239_09300) pbpX 1773991..1775166 (+) 1176 WP_032725712.1 serine hydrolase -
  AB3239_RS09305 (AB3239_09305) rny 1775442..1777004 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45478.87 Da        Isoelectric Point: 5.8577

>NTDB_id=1035525 AB3239_RS09290 WP_120028097.1 1771354..1772604(+) (cinA) [Bacillus subtilis strain TE3T-UV25]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNGEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKKTLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1035525 AB3239_RS09290 WP_120028097.1 1771354..1772604(+) (cinA) [Bacillus subtilis strain TE3T-UV25]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGGTGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGTTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGTTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGAAAACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.519

100

0.995
  cinA Streptococcus mitis NCTC 12261

45.933

100

0.462
  cinA Streptococcus mitis SK321

45.933

100

0.462
  cinA Streptococcus pneumoniae TIGR4

45.694

100

0.459
  cinA Streptococcus pneumoniae Rx1

45.455

100

0.457
  cinA Streptococcus pneumoniae R6

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae D39

45.215

100

0.454
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375

Multiple sequence alignment