Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABK045_RS20710 Genome accession   NZ_CP166498
Coordinates   4449205..4450464 (+) Length   419 a.a.
NCBI ID   WP_064239077.1    Uniprot ID   -
Organism   Stenotrophomonas pavanii strain 9978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4444205..4455464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK045_RS20695 (ABK045_20710) pilB 4445503..4447233 (-) 1731 WP_053506935.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABK045_RS20700 (ABK045_20715) - 4447394..4448227 (-) 834 WP_064239075.1 sterol desaturase family protein -
  ABK045_RS20705 (ABK045_20720) pilA/pilAI 4448422..4448850 (-) 429 WP_149901976.1 pilin Machinery gene
  ABK045_RS20710 (ABK045_20725) pilC 4449205..4450464 (+) 1260 WP_064239077.1 type II secretion system F family protein Machinery gene
  ABK045_RS20715 (ABK045_20730) - 4450468..4451331 (+) 864 WP_064239078.1 A24 family peptidase -
  ABK045_RS20720 (ABK045_20735) coaE 4451343..4451954 (+) 612 WP_064239079.1 dephospho-CoA kinase -
  ABK045_RS20725 (ABK045_20740) - 4452947..4453144 (+) 198 WP_057494699.1 hypothetical protein -
  ABK045_RS20730 (ABK045_20745) - 4454701..4455087 (-) 387 WP_064239081.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45932.27 Da        Isoelectric Point: 10.1940

>NTDB_id=1034805 ABK045_RS20710 WP_064239077.1 4449205..4450464(+) (pilC) [Stenotrophomonas pavanii strain 9978]
MSVSGSAMKKEPVARSTTELQPFVWEGTDKRGVKMKGEQMAKNANLLRAELRRQGITPKAVKAKPKPIFGSTGSRITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNLRMKRMIGTIRADIEGGSSLYEAISRHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIETLKGKIKKALFYPIMVMAVAILVSGILLVWVVPQFEDVFKGFGAELPAFTQLIVGVSRFLVSWWWL
ILFTFVGAIIGFIAAYKRSPKLQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
SVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPFIMVIIGGIV
GSIVIGMYLPIFKLAGAVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1034805 ABK045_RS20710 WP_064239077.1 4449205..4450464(+) (pilC) [Stenotrophomonas pavanii strain 9978]
ATGTCTGTCAGTGGCAGTGCAATGAAGAAGGAACCCGTGGCGCGCAGCACCACGGAACTGCAGCCGTTTGTATGGGAGGG
GACCGACAAGCGGGGTGTGAAGATGAAAGGCGAGCAGATGGCAAAGAACGCCAATCTGTTGCGCGCAGAATTGAGACGCC
AGGGCATCACACCCAAAGCGGTGAAGGCGAAGCCAAAGCCTATTTTCGGCAGCACAGGCAGCAGGATTACGCCGAAGGAC
ATTGCCTTCTTCAGTCGCCAGATGGCAACCATGATGAAGTCGGGCGTGCCTATCGTCTCTTCACTCGAGATCATTGGCGA
AGGGCACAAGAACCTCCGGATGAAGAGGATGATCGGAACGATCCGCGCCGATATCGAGGGCGGCTCATCCTTATATGAGG
CGATCAGCAGACATCCAGTGCAGTTCGACGAACTGTATCGCAACCTGGTCCGCGCGGGCGAAGGCGCTGGCGTATTGGAG
ACCGTGCTTGACACGGTGGCCAACTACAAGGAGAACATCGAAACACTCAAGGGCAAGATCAAGAAGGCGCTGTTCTATCC
GATCATGGTCATGGCAGTCGCCATCCTGGTCAGTGGCATCCTACTTGTCTGGGTGGTCCCTCAATTCGAAGATGTCTTCA
AAGGCTTCGGAGCCGAATTGCCCGCTTTCACCCAGCTGATTGTTGGCGTTTCTCGCTTCTTGGTGTCTTGGTGGTGGCTG
ATCCTGTTCACTTTTGTGGGGGCGATAATTGGCTTCATCGCAGCCTACAAGCGCTCTCCGAAGCTGCAACACACGATGGA
CCGATTGATCCTGAGGGTGCCAGTGATCGGCCAGATCATGCACAACAGCTCAATTGCCCGCTTTGCACGTACCACTGCAG
TGACCTTCAAGGCCGGCGTGCCCTTGGTGGAGGCGTTGGGCATTGTCGCCGGCGCGACCGGCAACAAGGTCTACGAAGAG
TCCGTACTGCGGATGCGTGACGACGTGTCGGTCGGCTACCCCGTGAACATGGCCATGAAGCAGCTGAACCTATTTCCTCA
TATGGTCATCCAGATGACCGGCATCGGCGAGGAGGCCGGTGCTCTGGACGCGATGCTGTTCAAGGTCGCCGAGTACTATG
AGCAAGAAGTCAACAATGCCGTGGACGCATTGAGCAGTCTGCTTGAACCTTTCATCATGGTCATCATTGGCGGAATCGTC
GGCAGCATCGTGATCGGCATGTACCTGCCGATCTTCAAGCTCGCAGGAGCGGTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

50.99

96.42

0.492
  pilC Pseudomonas stutzeri DSM 10701

51.768

94.511

0.489
  pilC Acinetobacter baylyi ADP1

49.261

96.897

0.477
  pilC Acinetobacter baumannii D1279779

48.866

94.749

0.463
  pilG Neisseria gonorrhoeae MS11

43.467

94.988

0.413
  pilG Neisseria meningitidis 44/76-A

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

39.655

96.897

0.384
  pilC Vibrio campbellii strain DS40M4

38.903

95.704

0.372
  pilC Thermus thermophilus HB27

37.346

97.136

0.363

Multiple sequence alignment