Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QUE75_RS13435 Genome accession   NZ_AP028062
Coordinates   2938287..2939507 (+) Length   406 a.a.
NCBI ID   WP_106695042.1    Uniprot ID   -
Organism   Marinobacter shengliensis strain D49     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2933287..2944507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE75_RS13410 (MAALD49_26530) - 2933747..2934070 (-) 324 WP_106763123.1 DNA-binding transcriptional regulator -
  QUE75_RS13415 (MAALD49_26540) - 2934057..2934383 (-) 327 WP_286250893.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QUE75_RS13420 (MAALD49_26550) - 2934556..2935131 (+) 576 WP_286250894.1 transposase -
  QUE75_RS13425 (MAALD49_26570) - 2935671..2936234 (-) 564 WP_396631659.1 pilin -
  QUE75_RS13430 (MAALD49_26580) pilB 2936572..2938284 (+) 1713 WP_286250896.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QUE75_RS13435 (MAALD49_26590) pilC 2938287..2939507 (+) 1221 WP_106695042.1 type II secretion system F family protein Machinery gene
  QUE75_RS13440 (MAALD49_26600) pilD 2939581..2940456 (+) 876 WP_286250901.1 A24 family peptidase Machinery gene
  QUE75_RS13445 (MAALD49_26610) coaE 2940460..2941065 (+) 606 WP_286250903.1 dephospho-CoA kinase -
  QUE75_RS13450 (MAALD49_26620) - 2941148..2942146 (+) 999 WP_286250906.1 hypothetical protein -
  QUE75_RS13455 (MAALD49_26630) tsaA 2942148..2942897 (+) 750 WP_286250908.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44616.62 Da        Isoelectric Point: 9.7122

>NTDB_id=103472 QUE75_RS13435 WP_106695042.1 2938287..2939507(+) (pilC) [Marinobacter shengliensis strain D49]
MAEKAQKLESYVWEGKDRKGNKTKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTGFASALRKHPRHFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
ELLKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFQGFGADLPVFTQMVVRLSEWLQTWWFVVLLGIVGTIFLFK
ESKRRSQKFSDIVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIMRIKNDVSSGT
QLQTTMKQQDIFPVMAVQLTAIGEESGNLDEMLRKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=103472 QUE75_RS13435 WP_106695042.1 2938287..2939507(+) (pilC) [Marinobacter shengliensis strain D49]
ATGGCAGAAAAAGCGCAGAAGCTGGAATCGTACGTTTGGGAAGGCAAAGACCGGAAGGGCAATAAGACTAAGGGAGAGCT
CACGGGCTCAAACTTGGCTCTTGTTAAAGCCCAGCTACGTAAGCAGGGCATTATCCCGGACAAGGTTAAGAAGAAGCCCA
AGCCGTTGTTTGGTGGCAGCAAGAAGATCACGCCGTTTGATATTGCGATGCTGACCCGCCAGCTGGCCACTATGATGAAA
GCAGGCGTACCGTTAGTTCAGAGCTTCGATATTGTGGCGGACGGACTTGAGAACAAAGGCTTGCAGGAACTGGTGATGAG
TATCCGGAATGATATTTCCTCCGGTACCGGTTTTGCTTCTGCCCTGCGCAAGCACCCAAGACATTTTGACGACCTCTACT
GCAACCTCGTGGATTCGGGTGAAAAGGCCGGTGCGCTTGAGCAGATGCTGGACAGGATAGCCACCTATCTCGAGAAGACG
GAGTTGCTCAAGAAAAAAGTCAAAAAGGCCATGACTTATCCGATTGCGGTTATTGTGGTTGCTATTGTGGTAACTGCCAT
ATTGCTGGTTAAGGTGGTTCCCCAGTTCGAGAGCTTGTTCCAGGGCTTCGGGGCTGACTTGCCGGTATTCACTCAAATGG
TAGTAAGGCTATCCGAATGGCTGCAGACCTGGTGGTTTGTTGTGCTGCTTGGCATTGTGGGTACCATTTTCCTATTCAAA
GAGTCCAAACGACGCTCCCAGAAATTTTCTGACATAGTGGACAAATATGTCCTCAAGCTGCCAGTTGTTGGCGAAATCCT
GGACAAATCCGCCGTCGCCAAGTTCGGCCGAGTGCTCTCTACCACCTTCGCCGCCGGTGTTCCATTGGTGGACGCACTGG
ACTCCGTTGCCGGAGCGACCGGTAACGCGGTATACCGGGATGCCATCATGAGAATCAAAAACGATGTCTCAAGTGGCACC
CAACTGCAAACAACCATGAAACAGCAGGACATTTTCCCGGTGATGGCGGTGCAGCTCACCGCCATCGGGGAAGAATCCGG
TAACCTGGACGAAATGCTGCGCAAAGTCGCCGAGCACTACGAAGCCGTGGTTGACGATATGGTTGACAACCTGACTGCTC
TGATGGAGCCCATGATTATGGCGGTTCTGGGTGTACTGGTAGGCGGCTTGATCATCGCCATGTACCTGCCAATCTTCCAA
ATGGGCCAGGTTGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.42

99.754

0.663
  pilC Acinetobacter baumannii D1279779

59.259

99.754

0.591
  pilC Acinetobacter baylyi ADP1

57.882

100

0.579
  pilC Legionella pneumophila strain ERS1305867

52.463

100

0.525
  pilG Neisseria gonorrhoeae MS11

42.118

100

0.421
  pilG Neisseria meningitidis 44/76-A

41.872

100

0.419
  pilC Vibrio campbellii strain DS40M4

40.295

100

0.404
  pilC Vibrio cholerae strain A1552

39.901

100

0.399

Multiple sequence alignment