Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QUE75_RS13440 Genome accession   NZ_AP028062
Coordinates   2939581..2940456 (+) Length   291 a.a.
NCBI ID   WP_286250901.1    Uniprot ID   -
Organism   Marinobacter shengliensis strain D49     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2934581..2945456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE75_RS13425 (MAALD49_26570) - 2935671..2936234 (-) 564 WP_396631659.1 pilin -
  QUE75_RS13430 (MAALD49_26580) pilB 2936572..2938284 (+) 1713 WP_286250896.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QUE75_RS13435 (MAALD49_26590) pilC 2938287..2939507 (+) 1221 WP_106695042.1 type II secretion system F family protein Machinery gene
  QUE75_RS13440 (MAALD49_26600) pilD 2939581..2940456 (+) 876 WP_286250901.1 A24 family peptidase Machinery gene
  QUE75_RS13445 (MAALD49_26610) coaE 2940460..2941065 (+) 606 WP_286250903.1 dephospho-CoA kinase -
  QUE75_RS13450 (MAALD49_26620) - 2941148..2942146 (+) 999 WP_286250906.1 hypothetical protein -
  QUE75_RS13455 (MAALD49_26630) tsaA 2942148..2942897 (+) 750 WP_286250908.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  QUE75_RS13460 (MAALD49_26640) - 2942941..2945295 (+) 2355 WP_106695037.1 response regulator -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32091.26 Da        Isoelectric Point: 7.1257

>NTDB_id=103473 QUE75_RS13440 WP_286250901.1 2939581..2940456(+) (pilD) [Marinobacter shengliensis strain D49]
MPSLDPFLSTPWLLYLTVTLFSLCIGSFLNVVILRLPKMMQQEWRCQCEEFLEVPEKQRKQETPLSLSKPASTCPSCGHK
IRAWENIPVISWLVLRGKCSSCGTSISPRYPIIEAITAIFSVVTIALLGPTEAALWALLLVWALVALTMIDFDTQLLPDS
ITLPLMWLGLVLNYFGVLTDFNSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWQLLPAVILLSSL
VGAVVGIALMVFKKHGREVPIPFGPYLAAAGLLGLWFGAEIQAIWFGFLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=103473 QUE75_RS13440 WP_286250901.1 2939581..2940456(+) (pilD) [Marinobacter shengliensis strain D49]
ATGCCCTCTCTAGACCCATTCCTCTCCACCCCCTGGCTCCTATACCTAACCGTCACCCTATTCTCCCTCTGCATCGGCAG
CTTCCTGAACGTAGTCATCTTACGCCTGCCAAAAATGATGCAGCAGGAATGGCGTTGCCAGTGTGAAGAGTTTCTGGAGG
TACCGGAAAAGCAGCGCAAGCAGGAAACACCCCTTTCCCTCTCCAAGCCAGCCTCCACCTGCCCATCCTGCGGTCATAAG
ATTCGGGCCTGGGAGAATATTCCGGTGATCAGTTGGCTAGTACTGCGGGGCAAGTGCTCCTCTTGTGGAACGTCGATTTC
ACCACGCTACCCGATTATTGAAGCCATCACAGCGATCTTCTCAGTGGTGACCATCGCTTTGCTGGGACCAACGGAAGCGG
CGCTTTGGGCCTTGCTGCTGGTTTGGGCCCTGGTGGCGCTGACGATGATCGATTTCGACACGCAGTTGCTACCAGATAGC
ATTACCCTGCCCCTGATGTGGCTCGGCCTGGTGTTGAACTATTTTGGTGTGCTGACAGATTTTAACAGTGCCTTCTGGGG
TGCCGTTGCCGGGTACTTGTCGCTTTGGTCGGTGTACTGGCTATTCAAGCTGGTGACTGGCAAAGAAGGCATGGGTCATG
GGGATTTCAAGCTGCTGGCGGCTCTGGGTGCCTGGTTGGGGTGGCAGTTGTTGCCGGCGGTGATTTTGCTGTCGTCCCTG
GTGGGGGCGGTGGTTGGTATTGCGCTGATGGTGTTCAAAAAACATGGGCGTGAGGTGCCGATTCCGTTTGGGCCTTATCT
GGCGGCGGCTGGGTTGTTGGGACTTTGGTTTGGGGCGGAGATTCAGGCGATTTGGTTTGGGTTTTTGGGAGTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

54.448

96.564

0.526
  pilD Acinetobacter nosocomialis M2

54.093

96.564

0.522
  pilD Vibrio cholerae strain A1552

52.143

96.22

0.502
  pilD Vibrio campbellii strain DS40M4

51.408

97.595

0.502
  pilD Neisseria gonorrhoeae MS11

50

86.598

0.433

Multiple sequence alignment