Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AB3094_RS06005 | Genome accession | NZ_CP166448 |
| Coordinates | 1356126..1357382 (-) | Length | 418 a.a. |
| NCBI ID | WP_057685777.1 | Uniprot ID | - |
| Organism | Xanthomonas euvesicatoria strain XTN47 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1351126..1362382
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3094_RS05995 (AB3094_05990) | coaE | 1354631..1355242 (-) | 612 | WP_007973907.1 | dephospho-CoA kinase | - |
| AB3094_RS06000 (AB3094_05995) | - | 1355256..1356119 (-) | 864 | WP_347129728.1 | A24 family peptidase | - |
| AB3094_RS06005 (AB3094_06000) | pilC | 1356126..1357382 (-) | 1257 | WP_057685777.1 | type II secretion system F family protein | Machinery gene |
| AB3094_RS06010 (AB3094_06005) | pilE | 1357709..1358149 (+) | 441 | WP_078590287.1 | pilin | Machinery gene |
| AB3094_RS06015 (AB3094_06010) | - | 1358227..1358661 (+) | 435 | WP_078590286.1 | pilin | - |
| AB3094_RS06020 (AB3094_06015) | pilB | 1358725..1360461 (+) | 1737 | WP_022558667.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AB3094_RS06025 (AB3094_06020) | - | 1360710..1361824 (+) | 1115 | WP_317719000.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45925.32 Da Isoelectric Point: 10.3003
>NTDB_id=1034526 AB3094_RS06005 WP_057685777.1 1356126..1357382(-) (pilC) [Xanthomonas euvesicatoria strain XTN47]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV
Nucleotide
Download Length: 1257 bp
>NTDB_id=1034526 AB3094_RS06005 WP_057685777.1 1356126..1357382(-) (pilC) [Xanthomonas euvesicatoria strain XTN47]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAACGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAAGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGCGCAGAGCTTCGTCGTC
AGGGAATCACGCCCACAGTTGTAAAGACTAAACCAAAACCACTTTTCGGCGCTGCGGGCAAAAAAATTTCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCCGGAGTCCCCATCGTTGGCGCACTTGAGATTATCGGTGA
GGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAACCTGGTTCGCGCGGGCGAAGGCGCTGGCGTATTGGAA
ACTGTTCTAGATACAGTTGCGAACTATAAAGAAAATATCGAAGCCCTTAAAGGCAAAATCAAAAAAGCCCTGTTTTATCC
CGCCATGGTAATGGCCGTCGCAATTATTGTCAGCGGCATCCTCCTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AGGGATTTGGAGCAGAGCTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCGAGTGTCGCAGCGATAGCCGGTTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTCTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAACAGCTCCATTGCTCGATTTGCCCGAACCACGGCGG
TCACATTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGCATTGTTGCCGGCGCGACTGGCAACAAGGTCTATGAGGAA
GCTGTACTGCGGATGCGCGACGACGTCTCTGTGGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTTCCTCA
TATGGTGGTTCAAATGACATCCATTGGCGAGGAAGCGGGCGCTCTTGATGCCATGCTATTTAAAGTAGCCGAGTATTTTG
AGCAGGAAGTGAATAACGCCGTGGACGCGCTGAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGTATGGTGATCGGCATGTATCTCCCAATTTTCAAACTTGGCTCGGTGGTATAA
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAACGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAAGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGCGCAGAGCTTCGTCGTC
AGGGAATCACGCCCACAGTTGTAAAGACTAAACCAAAACCACTTTTCGGCGCTGCGGGCAAAAAAATTTCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCCGGAGTCCCCATCGTTGGCGCACTTGAGATTATCGGTGA
GGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAACCTGGTTCGCGCGGGCGAAGGCGCTGGCGTATTGGAA
ACTGTTCTAGATACAGTTGCGAACTATAAAGAAAATATCGAAGCCCTTAAAGGCAAAATCAAAAAAGCCCTGTTTTATCC
CGCCATGGTAATGGCCGTCGCAATTATTGTCAGCGGCATCCTCCTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AGGGATTTGGAGCAGAGCTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCGAGTGTCGCAGCGATAGCCGGTTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTCTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAACAGCTCCATTGCTCGATTTGCCCGAACCACGGCGG
TCACATTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGCATTGTTGCCGGCGCGACTGGCAACAAGGTCTATGAGGAA
GCTGTACTGCGGATGCGCGACGACGTCTCTGTGGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTTCCTCA
TATGGTGGTTCAAATGACATCCATTGGCGAGGAAGCGGGCGCTCTTGATGCCATGCTATTTAAAGTAGCCGAGTATTTTG
AGCAGGAAGTGAATAACGCCGTGGACGCGCTGAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGTATGGTGATCGGCATGTATCTCCCAATTTTCAAACTTGGCTCGGTGGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baylyi ADP1 |
52.854 |
96.411 |
0.51 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.535 |
94.737 |
0.507 |
| pilC | Acinetobacter baumannii D1279779 |
51.861 |
96.411 |
0.5 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.232 |
97.129 |
0.498 |
| pilG | Neisseria gonorrhoeae MS11 |
45.5 |
95.694 |
0.435 |
| pilG | Neisseria meningitidis 44/76-A |
45 |
95.694 |
0.431 |
| pilC | Vibrio cholerae strain A1552 |
42.677 |
94.737 |
0.404 |
| pilC | Vibrio campbellii strain DS40M4 |
39.646 |
94.737 |
0.376 |
| pilC | Thermus thermophilus HB27 |
37.94 |
95.215 |
0.361 |