Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DXE57_RS07025 Genome accession   NZ_LT992476
Coordinates   1333432..1334034 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus isolate 21_LA_436     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328432..1339034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE57_RS06995 mreD 1329224..1329754 (+) 531 WP_001259929.1 rod shape-determining protein MreD -
  DXE57_RS07000 rplU 1330241..1330549 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  DXE57_RS07005 - 1330555..1330875 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  DXE57_RS07010 rpmA 1330887..1331171 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  DXE57_RS07015 obgE 1331658..1332950 (+) 1293 WP_000496090.1 GTPase ObgE -
  DXE57_RS07020 - 1332963..1333418 (+) 456 WP_000368902.1 ACT domain-containing protein -
  DXE57_RS07025 ruvA 1333432..1334034 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  DXE57_RS07030 ruvB 1334066..1335070 (+) 1005 WP_001005766.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  DXE57_RS07035 queA 1335072..1336097 (+) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DXE57_RS07040 tgt 1336120..1337259 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  DXE57_RS07045 yajC 1337278..1337538 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=1034528 DXE57_RS07025 WP_000271547.1 1333432..1334034(+) (ruvA) [Staphylococcus aureus isolate 21_LA_436]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1034528 DXE57_RS07025 WP_000271547.1 1333432..1334034(+) (ruvA) [Staphylococcus aureus isolate 21_LA_436]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAGCGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment