Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB9R84_RS12015 Genome accession   NZ_CP166304
Coordinates   2501023..2502249 (+) Length   408 a.a.
NCBI ID   WP_395535159.1    Uniprot ID   -
Organism   Oceanimonas smirnovii strain OS2020-133     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2496023..2507249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9R84_RS11990 (AB9R84_11980) ampD 2496663..2497205 (-) 543 WP_317074450.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AB9R84_RS11995 (AB9R84_11985) - 2497278..2497796 (+) 519 WP_346351578.1 retropepsin-like aspartic protease -
  AB9R84_RS12000 (AB9R84_11990) nadC 2497845..2498699 (+) 855 WP_317074448.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB9R84_RS12005 (AB9R84_11995) - 2498831..2499283 (+) 453 WP_346351577.1 pilin -
  AB9R84_RS12010 (AB9R84_12000) pilB 2499288..2501000 (+) 1713 WP_346351576.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB9R84_RS12015 (AB9R84_12005) pilC 2501023..2502249 (+) 1227 WP_395535159.1 type II secretion system F family protein Machinery gene
  AB9R84_RS12020 (AB9R84_12010) pilD 2502636..2503490 (+) 855 WP_019933129.1 prepilin peptidase Machinery gene
  AB9R84_RS12025 (AB9R84_12015) coaE 2503487..2504098 (+) 612 WP_395544940.1 dephospho-CoA kinase -
  AB9R84_RS12030 (AB9R84_12020) - 2504088..2505272 (-) 1185 WP_418139391.1 CsgG/HfaB family protein -
  AB9R84_RS12035 (AB9R84_12025) - 2505283..2506713 (-) 1431 WP_418139392.1 DUF6844 domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45449.72 Da        Isoelectric Point: 10.3428

>NTDB_id=1034143 AB9R84_RS12015 WP_395535159.1 2501023..2502249(+) (pilC) [Oceanimonas smirnovii strain OS2020-133]
MADTNAFRVYSYKWEGINRQGRKTTGLLQATDVRSARRELQRQGVNTLKIKRQRQGMLARYSNIIKAADIAIVTRQIATM
LEAGVPLVQTLQIIARSSGKPALRELASALAANVEGGTPLSEVLRKYPHYFDTLYCDLVHSGEQTGALEHIFDRIAVYRE
KAETIKSKIRKALFYPTLIVLVAMAVTAILLLFVIPQFEDIFAGFGAPLPLFTQMVISLSRWLQQYWLYMVTGVIVGILL
YIRAWRRSQKVRNMTDRFLLRLPVVGTILHKAALARFARTLATTFTAGIPLVEGLVSAAGASGNVVYRRAVMKMRDEVIA
GMQINLAMRTTRLFPDMVVQMVMIGEESGAIDDMMHKVASIYEREVDDAVDGLSSLIEPLIMVVLGILVGGLVIAMYLPI
FNLGSVIR

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1034143 AB9R84_RS12015 WP_395535159.1 2501023..2502249(+) (pilC) [Oceanimonas smirnovii strain OS2020-133]
ATGGCCGACACCAACGCATTCCGAGTGTACTCGTATAAGTGGGAAGGCATTAATCGTCAGGGCCGGAAAACAACAGGTCT
GCTGCAGGCAACCGATGTCAGATCGGCCCGCCGTGAACTGCAACGCCAGGGCGTAAACACGCTTAAAATTAAACGTCAGC
GGCAGGGGATGCTGGCGCGTTACAGCAACATTATCAAGGCTGCCGATATTGCCATTGTTACCCGCCAGATTGCCACCATG
CTGGAAGCCGGCGTGCCTCTGGTGCAGACACTGCAGATTATTGCCCGTTCTTCGGGAAAGCCGGCACTGCGGGAGCTGGC
CAGCGCGCTGGCTGCAAACGTGGAAGGCGGCACACCGCTTTCTGAGGTATTAAGAAAATATCCGCATTACTTTGATACTC
TTTATTGCGATCTGGTGCATTCCGGTGAGCAGACCGGGGCACTTGAGCATATTTTTGATCGTATTGCTGTGTACCGGGAA
AAAGCCGAAACCATCAAATCCAAAATTCGCAAGGCCCTGTTTTATCCCACCCTGATTGTGCTGGTGGCCATGGCCGTCAC
GGCAATTTTACTGCTGTTTGTTATTCCCCAGTTTGAAGATATATTTGCCGGTTTTGGCGCTCCCCTGCCCCTGTTTACAC
AAATGGTGATCAGCCTGTCGCGCTGGTTACAGCAGTATTGGCTTTATATGGTAACCGGCGTCATTGTGGGTATTTTGCTG
TATATTCGGGCCTGGCGGCGTTCACAAAAAGTGCGCAATATGACAGACCGCTTTTTGCTGCGCCTGCCCGTTGTGGGCAC
CATTTTGCATAAGGCAGCCCTGGCTCGTTTTGCCCGCACGCTGGCCACCACTTTTACCGCCGGCATTCCGCTGGTCGAAG
GGCTGGTGTCGGCCGCCGGTGCCTCTGGCAATGTGGTGTACCGGCGGGCGGTAATGAAAATGCGGGATGAGGTTATTGCT
GGCATGCAGATTAACCTGGCCATGCGCACTACCCGCTTGTTTCCGGATATGGTGGTGCAAATGGTGATGATAGGTGAAGA
ATCGGGTGCCATTGACGATATGATGCACAAGGTGGCCAGCATTTATGAGCGCGAAGTAGACGACGCCGTTGACGGCCTGT
CGAGCCTGATTGAGCCATTGATTATGGTGGTGCTGGGCATTTTGGTTGGCGGTCTGGTCATTGCCATGTATCTTCCCATC
TTTAACCTGGGCAGTGTGATACGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.525

97.059

0.51
  pilC Acinetobacter baumannii D1279779

50

100

0.5
  pilC Acinetobacter baylyi ADP1

50.75

98.039

0.498
  pilC Legionella pneumophila strain ERS1305867

48.768

99.51

0.485
  pilC Vibrio cholerae strain A1552

46.078

100

0.461
  pilC Vibrio campbellii strain DS40M4

45.833

100

0.458
  pilG Neisseria gonorrhoeae MS11

39.467

100

0.4
  pilG Neisseria meningitidis 44/76-A

39.225

100

0.397
  pilC Thermus thermophilus HB27

38.191

97.549

0.373

Multiple sequence alignment