Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB5I78_RS04590 Genome accession   NZ_CP166199
Coordinates   989295..990503 (-) Length   402 a.a.
NCBI ID   WP_369302572.1    Uniprot ID   -
Organism   Pseudomonas sp. N2-3-1-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 984295..995503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5I78_RS04550 - 985190..985363 (-) 174 WP_064450648.1 DUF3094 family protein -
  AB5I78_RS04555 - 985453..986082 (-) 630 WP_369302569.1 DUF1780 domain-containing protein -
  AB5I78_RS04560 - 986183..986650 (+) 468 WP_369302570.1 FAD/FMN-containing dehydrogenase -
  AB5I78_RS04565 - 986647..987336 (+) 690 WP_242194780.1 energy-coupling factor ABC transporter permease -
  AB5I78_RS04570 - 987403..987618 (+) 216 WP_003171680.1 hypothetical protein -
  AB5I78_RS04575 yacG 987615..987815 (-) 201 WP_145165296.1 DNA gyrase inhibitor YacG -
  AB5I78_RS04580 coaE 987812..988435 (-) 624 WP_262210097.1 dephospho-CoA kinase -
  AB5I78_RS04585 pilD 988432..989298 (-) 867 WP_369302571.1 A24 family peptidase Machinery gene
  AB5I78_RS04590 pilC 989295..990503 (-) 1209 WP_369302572.1 type II secretion system F family protein Machinery gene
  AB5I78_RS04595 - 990706..991119 (+) 414 WP_262210148.1 pilin -
  AB5I78_RS04605 - 991429..991734 (+) 306 WP_106578609.1 DUF6388 family protein -
  AB5I78_RS04610 nadC 991778..992626 (-) 849 WP_369302573.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB5I78_RS04615 - 992872..995028 (+) 2157 WP_369302574.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43752.50 Da        Isoelectric Point: 10.0865

>NTDB_id=1033684 AB5I78_RS04590 WP_369302572.1 989295..990503(-) (pilC) [Pseudomonas sp. N2-3-1-14]
MNDAATIYAWEGINRKGRRVCGQTTGQNLALIKAQLREQGICPGRIRKKTPRLPSFAPPIKPADIALFTRQLATLLKAGI
PLLQAFDIIGEGFDNRLMRELIKDLKQEIAAGNNLAAALKKQPRYFDDLYCHLIAAGEHAGALETLLERVAIHLEKSQQL
KARIKKAMTYPIAVIVVAGLVSTVLLIHVVPQFQNLFAGVDGKLPGFTLSVIALSEFLQRAWWMVALGLAATIIGLRHAY
RASSGFRRWLDLGLLNAPLAGTLLKKTAVARYARTLSTTFAAGVPLVQALDCVAGAVGNGLFKQAIEHMRHDVSTGMQLH
QSMANSRLFPSMAIQMTAIGEESGTLDRMLEKVANHYEADVQNLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1033684 AB5I78_RS04590 WP_369302572.1 989295..990503(-) (pilC) [Pseudomonas sp. N2-3-1-14]
ATGAATGACGCTGCAACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGAGTCTGCGGGCAAACCACAGGCCA
GAACCTGGCGCTGATCAAGGCACAACTGCGTGAGCAAGGGATTTGCCCCGGCCGAATCCGCAAGAAAACCCCACGCCTGC
CAAGCTTCGCCCCGCCGATAAAACCCGCCGATATTGCCCTGTTCACCCGCCAGCTGGCGACATTACTGAAGGCTGGCATA
CCGCTGTTGCAAGCGTTCGACATTATTGGCGAAGGCTTCGACAACCGCCTGATGCGCGAGCTGATAAAGGACTTGAAACA
GGAAATCGCTGCCGGCAACAACCTGGCGGCAGCGCTGAAAAAACAACCGCGCTATTTCGATGACCTGTATTGCCACCTGA
TTGCCGCCGGCGAGCACGCCGGTGCCCTGGAAACACTGCTGGAGCGCGTTGCCATCCATCTGGAGAAAAGCCAGCAGCTC
AAGGCGCGCATCAAGAAAGCCATGACCTACCCCATCGCCGTCATCGTGGTTGCAGGCCTGGTCAGCACGGTCTTGCTGAT
CCACGTGGTGCCGCAGTTCCAGAACCTGTTCGCCGGCGTCGATGGCAAACTGCCGGGCTTCACCCTGAGTGTCATTGCCT
TGTCCGAGTTCCTGCAGCGTGCCTGGTGGATGGTGGCACTGGGTTTGGCCGCGACAATTATCGGGCTGCGCCACGCCTAT
CGGGCATCTTCCGGTTTTCGCCGTTGGCTGGACCTCGGTTTGTTGAACGCGCCCCTGGCAGGCACACTGCTGAAAAAAAC
CGCGGTTGCCCGCTACGCCCGCACACTCTCAACGACCTTCGCCGCGGGCGTGCCGTTGGTGCAGGCGCTGGATTGCGTGG
CGGGGGCGGTCGGAAATGGGTTGTTCAAACAGGCGATAGAGCATATGCGTCACGATGTATCCACTGGCATGCAGTTGCAC
CAATCCATGGCCAACAGCCGCCTGTTTCCCAGTATGGCAATCCAGATGACGGCCATCGGGGAAGAATCGGGAACCCTGGA
TCGCATGCTGGAAAAAGTCGCCAATCACTACGAGGCCGATGTGCAAAACCTGGTCGATAACCTCACCAGCCTGATGGAGC
CCCTGATCATGGTGGTATTGGGCGGCATCGTCGGCGCACTGGTGATCGCCATGTACCTGCCAGTTTTCCAGCTGGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.987

98.259

0.58
  pilC Acinetobacter baylyi ADP1

51.515

98.507

0.507
  pilC Acinetobacter baumannii D1279779

50.38

98.259

0.495
  pilC Legionella pneumophila strain ERS1305867

48.101

98.259

0.473
  pilG Neisseria gonorrhoeae MS11

41.361

95.025

0.393
  pilG Neisseria meningitidis 44/76-A

40.576

95.025

0.386
  pilC Vibrio cholerae strain A1552

38.889

98.507

0.383
  pilC Thermus thermophilus HB27

37.406

99.751

0.373
  pilC Vibrio campbellii strain DS40M4

37.31

98.01

0.366

Multiple sequence alignment