Detailed information NTG1033683

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB5I78_RS04585
• Genome accession: NZ_CP166199
• Coordinates: 988432..989298 (-)
• Length: 288 a.a.
• NCBI ID: WP_369302571.1
• Uniprot ID: -
• Organism: Pseudomonas sp. N2-3-1-14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 983432..994298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5I78_RS04545	-	983831..985129 (-)	1299	WP_145165303.1	NAD(P)/FAD-dependent oxidoreductase	-
AB5I78_RS04550	-	985190..985363 (-)	174	WP_064450648.1	DUF3094 family protein	-
AB5I78_RS04555	-	985453..986082 (-)	630	WP_369302569.1	DUF1780 domain-containing protein	-
AB5I78_RS04560	-	986183..986650 (+)	468	WP_369302570.1	FAD/FMN-containing dehydrogenase	-
AB5I78_RS04565	-	986647..987336 (+)	690	WP_242194780.1	energy-coupling factor ABC transporter permease	-
AB5I78_RS04570	-	987403..987618 (+)	216	WP_003171680.1	hypothetical protein	-
AB5I78_RS04575	yacG	987615..987815 (-)	201	WP_145165296.1	DNA gyrase inhibitor YacG	-
AB5I78_RS04580	coaE	987812..988435 (-)	624	WP_262210097.1	dephospho-CoA kinase	-
AB5I78_RS04585	pilD	988432..989298 (-)	867	WP_369302571.1	A24 family peptidase	Machinery gene
AB5I78_RS04590	pilC	989295..990503 (-)	1209	WP_369302572.1	type II secretion system F family protein	Machinery gene
AB5I78_RS04595	-	990706..991119 (+)	414	WP_262210148.1	pilin	-
AB5I78_RS04605	-	991429..991734 (+)	306	WP_106578609.1	DUF6388 family protein	-
AB5I78_RS04610	nadC	991778..992626 (-)	849	WP_369302573.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31621.89 Da
• Isoelectric Point: 7.9689

>NTDB_id=1033683 AB5I78_RS04585 WP_369302571.1 988432..989298(-) (pilD) [Pseudomonas sp. N2-3-1-14]
MNPLLNEQPWLFVGMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAQEVLGLPADPAGPAYNLMRPHSCCPGCNHPIRAW
ENIPLLSYLLLKGRCAHCREPISARYPFTELAGALVSAAVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLILNSVGLLVTLPDALWGAVIGYMSLWTVFWLFKVITGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLLGVL
AGLILLRLRKPQASAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=1033683 AB5I78_RS04585 WP_369302571.1 988432..989298(-) (pilD) [Pseudomonas sp. N2-3-1-14]
TTGAACCCGTTGCTGAATGAACAACCGTGGCTCTTTGTCGGGATGGCGCTGGTGCTGGGCCTGATTGTCGGCAGTTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCGCCCAGGCCCAGGAGGTGCTCGGTTTGCCTG
CTGACCCTGCGGGCCCGGCTTACAACCTGATGCGCCCCCATTCCTGCTGCCCCGGATGCAATCATCCGATTCGCGCGTGG
GAAAATATTCCTCTGCTCAGCTACCTGCTGCTCAAGGGCCGTTGTGCCCATTGTCGAGAACCTATCAGTGCCCGCTACCC
GTTCACCGAACTTGCCGGCGCGCTGGTCTCGGCGGCGGTGGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGCTGAGCTGGGGGTTGCTGGCGATGAGCCTGATCGATGTGGATCATCAGCTGCTGCCCGACGTTCTGGTGCTGCCG
CTGTTATGGCTGGGGCTGATCCTCAACAGTGTTGGCTTGCTGGTGACGCTGCCGGATGCGCTCTGGGGTGCGGTCATTGG
GTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGGTGATCACCGGCAAGGACGGCATGGGCTATGGCGACTTCAAGT
TATTGGCCTTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGATGACACTGCTGATGTCTTCGTTGCTCGGGGTGCTT
GCCGGGCTGATCCTGCTGCGCTTGCGCAAGCCCCAGGCGTCGGCCCCAATGCCGTTTGGCCCGTGTTTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.676	96.528	0.528
pilD	Vibrio campbellii strain DS40M4	51.254	96.875	0.497
pilD	Acinetobacter baumannii D1279779	49.635	95.139	0.472
pilD	Acinetobacter nosocomialis M2	49.635	95.139	0.472
pilD	Neisseria gonorrhoeae MS11	50	89.583	0.448