Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB8P53_RS12075 Genome accession   NZ_CP166198
Coordinates   2431017..2432267 (+) Length   416 a.a.
NCBI ID   WP_097547234.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain BD-LB     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2426017..2437267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8P53_RS12055 (AB8P53_12060) yfmF 2426737..2428032 (+) 1296 WP_039105134.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  AB8P53_RS12060 (AB8P53_12065) yfmH 2428010..2429299 (+) 1290 WP_369956845.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB8P53_RS12065 (AB8P53_12070) - 2429413..2430312 (+) 900 WP_369956847.1 helix-turn-helix domain-containing protein -
  AB8P53_RS12070 (AB8P53_12075) pgsA 2430374..2430961 (+) 588 WP_011668109.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB8P53_RS12075 (AB8P53_12080) cinA 2431017..2432267 (+) 1251 WP_097547234.1 competence/damage-inducible protein A Machinery gene
  AB8P53_RS12080 (AB8P53_12085) recA 2432361..2433494 (+) 1134 WP_043023201.1 recombinase RecA Machinery gene
  AB8P53_RS12085 (AB8P53_12090) - 2433578..2433730 (-) 153 WP_369956851.1 hypothetical protein -
  AB8P53_RS12090 (AB8P53_12095) rny 2434058..2435617 (+) 1560 WP_085763328.1 ribonuclease Y -
  AB8P53_RS12095 (AB8P53_12100) - 2435749..2436543 (+) 795 WP_024525499.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44762.88 Da        Isoelectric Point: 5.2849

>NTDB_id=1033678 AB8P53_RS12075 WP_097547234.1 2431017..2432267(+) (cinA) [Levilactobacillus brevis strain BD-LB]
MQAEIIAVGTEILLGQIVDTNSAFIARELAEAGIEVYYHSLVGDNATRLTAVVEQARSRSDLVIISGGLGPTKDDLTKQT
VAHLLGVKLVEDALAMAKIRRRFAINGREMTPNNRLQALYPAGSQPLANRTGLAVGAFYQDPDGADIMLLPGPPSETEPM
FREQALPLLKQTYPRSEYLSSRVLRFFGIGESQLVTQLSDLIDQQTNPTIAPYAKVNEVTLRLTAQAPDEMQGQRLLDDL
TATIKARVGDYLYGYGDDNSLAAVVVQTLIDRQLTITAAESLTAGQFQSTLGSVPGVSAVFPGGFVTYAASAKHDLLGVS
QATIDQDGVVSAATAKEMASRARERLDTDFSLSFTGVAGPDALEGQPAGTVWLGLAQRGQQPQAKLLHLTGTRSAIRERS
VLTGLDWLRRTLQKVK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1033678 AB8P53_RS12075 WP_097547234.1 2431017..2432267(+) (cinA) [Levilactobacillus brevis strain BD-LB]
GTGCAAGCAGAAATTATTGCGGTTGGTACAGAGATTTTACTCGGGCAAATTGTGGATACGAACTCTGCCTTCATTGCGCG
CGAACTGGCGGAAGCTGGGATTGAGGTGTATTACCATTCTCTAGTAGGTGATAACGCAACCCGGTTAACGGCTGTTGTTG
AACAAGCCCGTTCGCGGAGTGATTTAGTGATTATTAGTGGGGGATTAGGACCGACCAAAGATGATTTGACAAAACAAACG
GTCGCTCACTTGTTAGGCGTAAAGTTGGTTGAAGATGCGTTGGCAATGGCTAAGATTCGTCGCCGGTTTGCTATCAATGG
CCGTGAGATGACGCCTAATAATCGCCTACAAGCTTTATATCCAGCAGGCAGTCAGCCCTTAGCAAATCGGACTGGGTTAG
CTGTGGGAGCTTTTTATCAAGATCCTGATGGTGCGGACATCATGCTATTACCGGGACCACCAAGTGAGACTGAACCCATG
TTTCGTGAGCAAGCCTTACCCCTGCTGAAGCAAACATATCCACGAAGTGAGTACTTGTCTTCACGGGTACTTCGGTTCTT
TGGCATCGGCGAAAGTCAATTGGTCACTCAACTGAGTGATCTGATTGACCAGCAGACTAATCCGACCATCGCTCCTTATG
CTAAAGTTAATGAAGTAACGTTACGTTTAACCGCACAGGCCCCGGATGAGATGCAAGGGCAACGCCTCTTAGATGACTTA
ACGGCGACGATTAAGGCCCGCGTAGGGGATTATCTTTATGGTTATGGTGATGATAATTCATTGGCGGCAGTGGTGGTTCA
GACACTCATTGACCGTCAATTGACCATTACGGCTGCTGAGAGCTTAACGGCCGGTCAATTTCAAAGTACCTTGGGAAGTG
TTCCCGGTGTTTCGGCGGTTTTCCCTGGTGGTTTTGTCACCTATGCGGCCAGTGCCAAGCATGACTTATTGGGAGTCTCG
CAGGCCACGATTGATCAGGATGGTGTGGTTAGTGCGGCGACAGCTAAGGAAATGGCATCACGTGCCCGAGAACGGCTGGA
TACTGATTTTTCGTTGAGCTTCACAGGAGTTGCTGGCCCGGACGCCTTGGAAGGCCAACCGGCTGGAACAGTCTGGTTAG
GTTTAGCGCAACGGGGACAACAACCACAGGCAAAACTGTTACATTTGACGGGTACGCGATCGGCAATTCGGGAACGGAGT
GTCTTGACCGGGTTGGACTGGTTGCGACGAACATTGCAAAAAGTAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

51.325

99.76

0.512
  cinA Streptococcus mitis SK321

50

100

0.505
  cinA Streptococcus mitis NCTC 12261

49.881

100

0.505
  cinA Streptococcus pneumoniae TIGR4

48.931

100

0.495
  cinA Streptococcus pneumoniae Rx1

48.931

100

0.495
  cinA Streptococcus pneumoniae R6

48.931

100

0.495
  cinA Streptococcus pneumoniae D39

48.694

100

0.493
  cinA Bacillus subtilis subsp. subtilis str. 168

47.7

99.279

0.474
  cinA Streptococcus suis isolate S10

44.471

100

0.445

Multiple sequence alignment