Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB8599_RS13660 Genome accession   NZ_CP166194
Coordinates   3072411..3073634 (+) Length   407 a.a.
NCBI ID   WP_407331442.1    Uniprot ID   -
Organism   Enterovibrio sp. 27052020O     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3067411..3078634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8599_RS13640 (AB8599_13645) ampD 3068362..3068913 (-) 552 WP_407331438.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AB8599_RS13645 (AB8599_13650) nadC 3069108..3070013 (+) 906 WP_407331439.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB8599_RS13650 (AB8599_13655) - 3070244..3070681 (+) 438 WP_407331440.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AB8599_RS13655 (AB8599_13660) pilB 3070705..3072399 (+) 1695 WP_407331441.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB8599_RS13660 (AB8599_13665) pilC 3072411..3073634 (+) 1224 WP_407331442.1 type II secretion system F family protein Machinery gene
  AB8599_RS13665 (AB8599_13670) pilD 3073774..3074646 (+) 873 WP_407331443.1 prepilin peptidase Machinery gene
  AB8599_RS13670 (AB8599_13675) coaE 3074647..3075267 (+) 621 WP_407331444.1 dephospho-CoA kinase -
  AB8599_RS13675 (AB8599_13680) zapD 3075260..3076000 (+) 741 WP_407331445.1 cell division protein ZapD -
  AB8599_RS13680 (AB8599_13685) yacG 3076070..3076222 (+) 153 WP_407333228.1 DNA gyrase inhibitor YacG -
  AB8599_RS13685 (AB8599_13690) mutT 3076310..3076714 (-) 405 WP_407331446.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45243.22 Da        Isoelectric Point: 10.1382

>NTDB_id=1033643 AB8599_RS13660 WP_407331442.1 3072411..3073634(+) (pilC) [Enterovibrio sp. 27052020O]
MASKPRKLYAFQWRGTTAKGVKIKGQLLAYHEQDARHSLTEQRVRIIKIKRRSPSSWAKRRNTANAKDITLFTRQMATML
EAGVPLGETLQLLKTGSKKAEMKLIIGQIYSHIEAGSSLAQAMKSSSILFDQFYCDLVATGEQTGRLEQIFARICVYREK
SEDTRSKVIKAMIYPSIVCSIAILVTIGMLLFVIPTFKDIFSSFNAELPWFTQKVLGVSDAIHDYGVYMLIGIILAALAF
KTSYQKSYKFRLKASRLSLRIPILGDVLTKATLSRFTRTLATTFSAGIPLLNGLSAAGKTANNTYFKQVIEEVHKQTSGG
RPLHRAIRETDAFPDMMIQMVMIGEESGALDDMLNKVAGLYEADVDNTVDNLGKILEPMIIVLLGVLIGSLVVAMYLPMF
DLMSVMG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1033643 AB8599_RS13660 WP_407331442.1 3072411..3073634(+) (pilC) [Enterovibrio sp. 27052020O]
ATGGCCTCAAAACCCCGCAAGCTTTATGCATTCCAGTGGCGCGGCACTACCGCCAAAGGCGTCAAAATCAAAGGCCAATT
ACTTGCTTACCATGAACAAGATGCCCGACATTCATTAACCGAGCAGCGGGTTCGCATCATCAAAATCAAGCGTCGCTCTC
CATCTTCATGGGCAAAGCGTCGCAATACGGCTAATGCCAAAGATATCACGCTATTTACGCGACAAATGGCCACCATGTTA
GAAGCAGGTGTACCACTGGGTGAAACCCTACAACTGCTGAAAACAGGATCAAAGAAGGCTGAAATGAAGTTGATCATCGG
CCAAATTTATAGCCATATTGAAGCAGGTTCTTCTTTGGCACAGGCAATGAAATCTAGCTCAATCCTATTTGATCAGTTCT
ACTGCGATCTGGTGGCAACGGGTGAGCAAACCGGTCGCTTAGAACAAATATTTGCGCGCATCTGCGTGTATCGTGAAAAG
AGTGAGGATACCCGCTCCAAAGTCATTAAAGCCATGATCTACCCGAGCATTGTCTGTTCAATCGCTATTTTGGTGACCAT
CGGCATGCTCTTGTTTGTCATCCCAACCTTTAAAGATATTTTCTCGTCGTTCAACGCTGAACTGCCTTGGTTTACACAAA
AAGTTCTCGGTGTGTCTGATGCTATTCATGATTATGGCGTGTACATGCTGATTGGCATAATATTGGCTGCATTGGCGTTC
AAAACCAGCTATCAAAAAAGCTATAAATTTCGCCTCAAAGCCAGTCGACTTTCCCTGCGTATCCCTATTCTTGGTGACGT
ACTCACAAAAGCCACCCTCTCACGCTTTACTCGCACATTGGCGACCACTTTCAGTGCCGGTATCCCACTGCTCAATGGTT
TGTCGGCAGCAGGGAAAACAGCGAACAACACCTACTTCAAACAGGTGATTGAAGAGGTTCACAAGCAAACCTCTGGCGGC
CGCCCTTTGCATCGCGCCATCCGAGAAACTGATGCCTTCCCTGACATGATGATCCAAATGGTGATGATCGGCGAAGAGTC
CGGTGCATTGGATGATATGTTGAACAAAGTCGCGGGGCTTTATGAAGCCGATGTCGATAACACGGTCGACAACCTTGGCA
AGATCCTTGAGCCGATGATCATTGTACTGCTTGGCGTATTGATTGGATCCTTGGTCGTGGCCATGTATTTACCCATGTTT
GATCTCATGAGTGTTATGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

50.985

99.754

0.509
  pilC Vibrio campbellii strain DS40M4

49.626

98.526

0.489
  pilC Acinetobacter baumannii D1279779

42.506

100

0.425
  pilC Acinetobacter baylyi ADP1

42.157

100

0.423
  pilC Pseudomonas stutzeri DSM 10701

41.379

99.754

0.413
  pilG Neisseria gonorrhoeae MS11

39.356

99.263

0.391
  pilG Neisseria meningitidis 44/76-A

39.109

99.263

0.388
  pilC Legionella pneumophila strain ERS1305867

38.653

98.526

0.381

Multiple sequence alignment