Detailed information NTG1033644

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB8599_RS13665
• Genome accession: NZ_CP166194
• Coordinates: 3073774..3074646 (+)
• Length: 290 a.a.
• NCBI ID: WP_407331443.1
• Uniprot ID: -
• Organism: Enterovibrio sp. 27052020O
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3068774..3079646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8599_RS13645 (AB8599_13650)	nadC	3069108..3070013 (+)	906	WP_407331439.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AB8599_RS13650 (AB8599_13655)	-	3070244..3070681 (+)	438	WP_407331440.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AB8599_RS13655 (AB8599_13660)	pilB	3070705..3072399 (+)	1695	WP_407331441.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB8599_RS13660 (AB8599_13665)	pilC	3072411..3073634 (+)	1224	WP_407331442.1	type II secretion system F family protein	Machinery gene
AB8599_RS13665 (AB8599_13670)	pilD	3073774..3074646 (+)	873	WP_407331443.1	prepilin peptidase	Machinery gene
AB8599_RS13670 (AB8599_13675)	coaE	3074647..3075267 (+)	621	WP_407331444.1	dephospho-CoA kinase	-
AB8599_RS13675 (AB8599_13680)	zapD	3075260..3076000 (+)	741	WP_407331445.1	cell division protein ZapD	-
AB8599_RS13680 (AB8599_13685)	yacG	3076070..3076222 (+)	153	WP_407333228.1	DNA gyrase inhibitor YacG	-
AB8599_RS13685 (AB8599_13690)	mutT	3076310..3076714 (-)	405	WP_407331446.1	8-oxo-dGTP diphosphatase MutT	-
AB8599_RS13690 (AB8599_13695)	secA	3076799..3079519 (-)	2721	WP_407331447.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32047.17 Da
• Isoelectric Point: 6.6757

>NTDB_id=1033644 AB8599_RS13665 WP_407331443.1 3073774..3074646(+) (pilD) [Enterovibrio sp. 27052020O]
MNWLFDSPSLYVFLASVFGLIVGSFLNVVIYRFPKMMEAQWREECHECFPSEMSAPKATEVFNLSLPRSHCPSCQAPVKA
IDNVPVLSWLILGGKCRHCKTPISIRYPFVELLTALLVGTTAYFLPGSYWSLAVIAATFVLVALCFIDIDTMLLPDQMTL
PLMWAGILLAVIGISPVSLQDAVIGAMAGYLSLWSVFQLFRLLTGKEGMGYGDFKLLAALGAWLGWQPLPMVILIASFAG
AIIGIILMRIKGTGKETPFSFGPYLAMAGWISLLWGNNIMDWYLTSYLGY

Nucleotide

• Length: 873 bp

>NTDB_id=1033644 AB8599_RS13665 WP_407331443.1 3073774..3074646(+) (pilD) [Enterovibrio sp. 27052020O]
ATGAATTGGCTGTTCGACTCTCCGAGTCTGTATGTATTTCTCGCGTCTGTGTTTGGGCTTATCGTAGGTAGCTTTCTCAA
CGTCGTGATTTATCGCTTTCCGAAAATGATGGAAGCGCAATGGCGCGAGGAATGCCACGAATGCTTTCCAAGCGAAATGT
CGGCTCCCAAAGCCACAGAAGTATTTAACCTCAGCCTCCCCCGTTCACATTGCCCTTCTTGCCAAGCGCCCGTTAAAGCG
ATTGATAACGTTCCCGTATTGAGCTGGCTGATCCTTGGCGGTAAGTGCCGACACTGCAAAACTCCGATTAGCATTCGCTA
CCCCTTTGTGGAATTGCTGACCGCACTGCTTGTGGGCACCACGGCGTATTTTCTGCCGGGTTCCTATTGGTCACTCGCCG
TGATTGCCGCCACCTTTGTGTTGGTCGCTCTGTGCTTTATCGATATCGACACCATGCTGTTGCCAGATCAAATGACGCTG
CCTTTGATGTGGGCGGGTATTCTTCTGGCGGTGATTGGTATATCACCGGTTTCACTGCAAGATGCGGTGATTGGCGCCAT
GGCAGGCTATTTGTCGCTTTGGAGCGTGTTCCAATTGTTTAGATTGCTGACTGGCAAAGAAGGCATGGGATACGGTGATT
TCAAATTACTTGCCGCGCTTGGCGCGTGGCTTGGCTGGCAACCGCTCCCTATGGTGATCCTTATTGCGTCGTTTGCGGGT
GCAATCATTGGCATCATCTTGATGCGCATAAAAGGCACAGGGAAAGAGACCCCGTTCTCGTTTGGGCCATACCTTGCTAT
GGCGGGCTGGATTAGTCTGCTGTGGGGTAATAACATCATGGATTGGTATTTAACGTCATATTTGGGTTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	62.191	97.586	0.607
pilD	Vibrio cholerae strain A1552	59.17	99.655	0.59
pilD	Acinetobacter baumannii D1279779	50	95.172	0.476
pilD	Acinetobacter nosocomialis M2	49.275	95.172	0.469
pilD	Neisseria gonorrhoeae MS11	47.273	94.828	0.448