Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB8808_RS06060 Genome accession   NZ_CP166101
Coordinates   1537954..1539219 (+) Length   421 a.a.
NCBI ID   WP_369930572.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 2632     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1523714..1539219 1537954..1539219 within 0


Gene organization within MGE regions


Location: 1523714..1539219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8808_RS06000 (AB8808_06000) - 1523714..1524148 (+) 435 WP_369930558.1 pilin -
  AB8808_RS06005 (AB8808_06005) pilE 1524452..1524898 (+) 447 WP_369930559.1 pilin Machinery gene
  AB8808_RS06010 (AB8808_06010) - 1524978..1526996 (+) 2019 WP_369930561.1 tetratricopeptide repeat protein -
  AB8808_RS06015 (AB8808_06015) - 1527049..1529028 (+) 1980 WP_369930562.1 hypothetical protein -
  AB8808_RS06020 (AB8808_06020) - 1529025..1530254 (+) 1230 WP_369930563.1 lipopolysaccharide biosynthesis protein -
  AB8808_RS06025 (AB8808_06025) - 1530260..1531132 (-) 873 WP_369930564.1 hypothetical protein -
  AB8808_RS06030 (AB8808_06030) - 1531137..1532237 (-) 1101 WP_369930565.1 class I SAM-dependent methyltransferase -
  AB8808_RS06035 (AB8808_06035) - 1532240..1533193 (-) 954 WP_369930566.1 rhamnosyltransferase -
  AB8808_RS06040 (AB8808_06040) - 1533165..1534310 (-) 1146 WP_369930568.1 glycosyltransferase family 4 protein -
  AB8808_RS06045 (AB8808_06045) - 1534317..1535048 (-) 732 WP_369930569.1 methyltransferase domain-containing protein -
  AB8808_RS06050 (AB8808_06050) - 1535045..1535911 (-) 867 WP_369930570.1 glycosyltransferase family 2 protein -
  AB8808_RS06055 (AB8808_06055) pilB 1536082..1537809 (+) 1728 WP_369930571.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB8808_RS06060 (AB8808_06060) pilC 1537954..1539219 (+) 1266 WP_369930572.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45935.26 Da        Isoelectric Point: 10.0555

>NTDB_id=1033414 AB8808_RS06060 WP_369930572.1 1537954..1539219(+) (pilC) [Xanthomonas sp. NCPPB 2632]
MAIATASKNARAMGAARATVSALVTYDWTALDKRGKRMKGEMQAKNASLVKAELRRQGMNPQQVKERTKPLFGSSGKKVT
ARDVAIFSRQIATMMSSGVPMVQALEIITGGQKNPRFKTILLDIKTSIEGGSSLHEAMALHPVQFDELYRNLVHAGESAG
VLDTVLDTVATYKERMESIKKKIKKALFYPIMVLVVALLVSMILLLFVVPVFQQTFKDAGADLPAPTQFVVSASEFMQSY
WWMVIGGIVGGVAALIYFKKRSPRFAHFLERIMLRLPVMGNIMHQSAIARFARTLGVTFHAGVPLVEALEAVAGATGSII
YGEAVMQMRDDIAVGHQLQLSMRQTGLFPNMVVQMTAIGEESGSLDAMLFKVAEFYEEEVGNAVDNLATLLEPMIMVILG
VLVGGMVISLYLPIFKLAGTV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=1033414 AB8808_RS06060 WP_369930572.1 1537954..1539219(+) (pilC) [Xanthomonas sp. NCPPB 2632]
ATGGCTATCGCCACCGCCAGCAAGAATGCGCGCGCCATGGGCGCCGCGCGAGCCACTGTAAGCGCACTGGTCACGTACGA
CTGGACCGCGCTGGACAAGCGCGGCAAGCGCATGAAAGGCGAGATGCAGGCGAAGAACGCCTCACTCGTCAAGGCGGAGT
TGCGCCGCCAGGGGATGAATCCCCAACAGGTGAAAGAACGGACCAAACCACTTTTTGGATCGTCGGGCAAAAAGGTTACG
GCACGCGACGTGGCGATCTTCAGCCGTCAAATTGCCACGATGATGTCGTCCGGCGTGCCTATGGTTCAGGCCCTCGAAAT
CATCACCGGCGGACAGAAGAATCCCCGATTCAAAACCATACTCCTCGACATCAAGACGTCGATCGAAGGCGGCTCGTCAC
TGCACGAGGCCATGGCGCTACACCCAGTACAGTTCGACGAGCTCTACCGCAATCTGGTCCATGCTGGTGAATCGGCCGGT
GTACTCGACACCGTGCTCGACACCGTGGCGACCTATAAAGAGCGGATGGAGAGCATTAAAAAGAAGATCAAGAAGGCGCT
GTTTTATCCGATCATGGTTCTGGTCGTGGCCCTCCTGGTGTCCATGATTCTCTTGCTCTTCGTGGTACCCGTGTTCCAGC
AGACATTTAAAGATGCCGGAGCAGACTTGCCAGCACCCACCCAGTTCGTGGTGAGTGCATCGGAATTCATGCAGTCATAC
TGGTGGATGGTGATTGGCGGGATCGTTGGCGGCGTAGCCGCATTGATCTACTTCAAGAAACGATCGCCTAGGTTCGCCCA
CTTTCTGGAGCGCATCATGCTGCGATTACCGGTCATGGGCAACATCATGCACCAGTCAGCTATCGCTCGTTTCGCACGCA
CGCTTGGCGTGACCTTTCATGCAGGCGTGCCCCTAGTGGAGGCTTTAGAGGCCGTTGCGGGCGCCACAGGTAGCATAATC
TACGGTGAAGCAGTGATGCAGATGCGCGACGACATCGCGGTCGGCCATCAATTACAGCTTTCGATGCGCCAAACCGGGCT
GTTTCCGAATATGGTGGTTCAGATGACTGCCATCGGTGAGGAGTCTGGCTCATTGGATGCGATGTTGTTCAAAGTCGCAG
AATTTTACGAAGAAGAGGTCGGGAACGCTGTAGATAATCTCGCGACCCTGCTCGAGCCGATGATAATGGTGATCCTCGGC
GTCCTCGTCGGTGGCATGGTCATTTCCCTGTACCTGCCCATCTTCAAGCTGGCCGGCACGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.887

94.774

0.52
  pilC Acinetobacter baumannii D1279779

50.503

94.537

0.477
  pilC Pseudomonas stutzeri DSM 10701

50.758

94.062

0.477
  pilC Acinetobacter baylyi ADP1

47.317

97.387

0.461
  pilG Neisseria meningitidis 44/76-A

42.746

91.686

0.392
  pilG Neisseria gonorrhoeae MS11

42.746

91.686

0.392
  pilC Vibrio campbellii strain DS40M4

40.201

94.537

0.38
  pilC Vibrio cholerae strain A1552

39.747

93.824

0.373

Multiple sequence alignment