Detailed information NTG1033413

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: AB8808_RS06055
• Genome accession: NZ_CP166101
• Coordinates: 1536082..1537809 (+)
• Length: 575 a.a.
• NCBI ID: WP_369930571.1
• Uniprot ID: -
• Organism: Xanthomonas sp. NCPPB 2632
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1523714..1539219	1536082..1537809	within	0

Gene organization within MGE regions

Location: 1523714..1539219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8808_RS06000 (AB8808_06000)	-	1523714..1524148 (+)	435	WP_369930558.1	pilin	-
AB8808_RS06005 (AB8808_06005)	pilE	1524452..1524898 (+)	447	WP_369930559.1	pilin	Machinery gene
AB8808_RS06010 (AB8808_06010)	-	1524978..1526996 (+)	2019	WP_369930561.1	tetratricopeptide repeat protein	-
AB8808_RS06015 (AB8808_06015)	-	1527049..1529028 (+)	1980	WP_369930562.1	hypothetical protein	-
AB8808_RS06020 (AB8808_06020)	-	1529025..1530254 (+)	1230	WP_369930563.1	lipopolysaccharide biosynthesis protein	-
AB8808_RS06025 (AB8808_06025)	-	1530260..1531132 (-)	873	WP_369930564.1	hypothetical protein	-
AB8808_RS06030 (AB8808_06030)	-	1531137..1532237 (-)	1101	WP_369930565.1	class I SAM-dependent methyltransferase	-
AB8808_RS06035 (AB8808_06035)	-	1532240..1533193 (-)	954	WP_369930566.1	rhamnosyltransferase	-
AB8808_RS06040 (AB8808_06040)	-	1533165..1534310 (-)	1146	WP_369930568.1	glycosyltransferase family 4 protein	-
AB8808_RS06045 (AB8808_06045)	-	1534317..1535048 (-)	732	WP_369930569.1	methyltransferase domain-containing protein	-
AB8808_RS06050 (AB8808_06050)	-	1535045..1535911 (-)	867	WP_369930570.1	glycosyltransferase family 2 protein	-
AB8808_RS06055 (AB8808_06055)	pilB	1536082..1537809 (+)	1728	WP_369930571.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB8808_RS06060 (AB8808_06060)	pilC	1537954..1539219 (+)	1266	WP_369930572.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 575 a.a.
• Molecular weight: 62514.30 Da
• Isoelectric Point: 6.7311

>NTDB_id=1033413 AB8808_RS06055 WP_369930571.1 1536082..1537809(+) (pilB) [Xanthomonas sp. NCPPB 2632]
MASQMHSPMLAGLTGMARRLVNEGVMAEADVRKAVQDAAEKRSSLSAWLVDHHLVESAKLSQVASAEFGMPLMDIGAMAT
ANMPLDLVTEALITKHQALPLFKRGKRLFVGIADPMQSHALDEIKFHSNHMVEPVLVERGQLRRVIDTALAAMNNSVPAF
EDGGLDELALEGSDEEGDVTTGIDANANDDAPIVKFVNKVLVDAIKRGASDIHFEPFEAIYRVRLRMDGILRIVATAPNK
LGNRIASRLKVMSGLDIAERRVPQDGRIKLNLTKTRAIDFRVSTLPTLFGEKIVLRILDGSSAKLGIDKLGYEEVQKNLY
LNAIEKPYGMVLVTGPTGSGKTVSLYTALNILNTEGRNISTVEDPVEIRVEGINQVQQNVKRGMTFAAALRSFLRQDPDV
IMVGEIRDLETAEIAVKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNIISSVTLIIAQRLARRLHDCKRPIQLPPAA
LLAEGFTQAEIDAGITIYEAVGCDSCNEGYKGRVGIYQVMPLVEDIQQIILEGGNAMQIAAVAKKAGINDLRASALLKVR
NGVTSLAEINRVTKD

Nucleotide

• Length: 1728 bp

>NTDB_id=1033413 AB8808_RS06055 WP_369930571.1 1536082..1537809(+) (pilB) [Xanthomonas sp. NCPPB 2632]
ATGGCTTCACAAATGCATTCCCCCATGCTGGCGGGACTGACCGGCATGGCCCGGCGCCTAGTCAACGAGGGTGTCATGGC
CGAGGCCGACGTCCGCAAGGCGGTACAGGATGCCGCCGAGAAGCGATCGTCGCTGTCCGCCTGGCTGGTCGATCACCACC
TGGTCGAGAGCGCCAAGCTCTCCCAGGTCGCGTCCGCCGAGTTCGGCATGCCCCTCATGGACATCGGCGCCATGGCCACG
GCCAACATGCCCCTGGACCTGGTCACCGAGGCGCTGATCACCAAGCACCAGGCGCTGCCGCTGTTCAAGCGCGGCAAGCG
CCTGTTCGTAGGCATCGCCGACCCGATGCAGTCCCACGCACTGGACGAGATCAAGTTCCACTCCAACCACATGGTCGAGC
CCGTGCTGGTCGAGCGCGGCCAGCTGCGCCGGGTGATCGACACCGCGCTGGCGGCCATGAACAACTCGGTGCCGGCCTTC
GAGGATGGCGGCCTGGACGAGCTGGCCCTGGAAGGCAGCGACGAGGAAGGCGACGTCACCACCGGCATCGACGCCAACGC
CAACGACGACGCGCCCATCGTCAAGTTCGTCAACAAGGTGCTGGTCGACGCGATCAAGCGCGGCGCCTCGGACATCCACT
TCGAGCCCTTCGAAGCCATCTACCGCGTGCGTCTGCGCATGGACGGCATCCTGCGCATCGTCGCCACGGCACCCAACAAG
CTGGGCAACCGCATCGCCTCGCGCCTGAAGGTCATGAGCGGCCTGGACATCGCCGAGCGCCGCGTGCCGCAGGACGGTCG
CATCAAGCTCAACCTGACCAAGACCCGCGCCATCGACTTCCGCGTCAGCACGCTGCCCACGCTGTTCGGCGAGAAGATCG
TGCTGCGTATCCTGGATGGCTCATCGGCCAAGCTGGGCATCGACAAGCTGGGTTACGAGGAGGTCCAGAAAAACCTCTAC
CTGAACGCCATCGAGAAACCCTACGGCATGGTGCTGGTCACCGGCCCCACCGGCTCCGGCAAGACGGTCTCGCTGTACAC
CGCACTGAACATCCTCAACACCGAGGGCCGCAACATCTCCACGGTGGAAGACCCGGTCGAAATCCGCGTCGAGGGCATCA
ACCAGGTCCAGCAGAACGTCAAGCGCGGCATGACCTTCGCGGCCGCCCTGCGCTCCTTCCTGCGCCAGGATCCGGACGTC
ATCATGGTCGGCGAGATCCGCGACCTGGAAACCGCGGAGATCGCGGTCAAGGCCGCGCAGACCGGCCATATGGTGCTGTC
CACCCTGCACACCAACGATGCGCCACAGACCATCGCGCGCCTGATGAACATGGGCATCGCGCCTTACAACATCATCTCGT
CGGTCACCCTGATCATCGCCCAGCGCCTGGCCCGCCGGCTGCACGACTGCAAGCGACCGATCCAGCTGCCCCCGGCGGCC
CTGCTGGCCGAAGGCTTCACCCAGGCCGAAATCGACGCCGGGATCACCATCTACGAGGCCGTCGGCTGCGACAGCTGCAA
CGAGGGCTACAAGGGCCGCGTAGGCATCTACCAGGTCATGCCGCTGGTCGAGGATATCCAGCAGATCATCCTGGAGGGCG
GCAACGCCATGCAGATCGCCGCGGTGGCGAAGAAGGCGGGCATCAACGATCTGCGCGCCTCCGCGCTGCTCAAGGTCCGC
AACGGCGTCACCAGCCTGGCCGAGATCAACCGTGTCACCAAGGACTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (49-150)

• Type II/IV secretion system protein (T2SSE) (199-466)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baumannii D1279779	54.957	100	0.55
pilB	Acinetobacter baylyi ADP1	53.913	100	0.539
pilB	Legionella pneumophila strain ERS1305867	50.352	98.783	0.497
pilB	Vibrio cholerae strain A1552	49.291	98.087	0.483
pilF	Neisseria gonorrhoeae MS11	47.257	98.261	0.464
pilB	Vibrio parahaemolyticus RIMD 2210633	49.067	93.217	0.457
pilB	Vibrio campbellii strain DS40M4	46.032	98.609	0.454
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	36.364	100	0.376
pilF	Thermus thermophilus HB27	37.993	97.043	0.369