Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB8813_RS17355 Genome accession   NZ_CP166095
Coordinates   4020430..4021686 (+) Length   418 a.a.
NCBI ID   WP_104613429.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. corylina strain NCPPB 935     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4015430..4026686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8813_RS17335 (AB8813_17405) pilR 4015706..4017100 (+) 1395 WP_104613414.1 sigma-54 dependent transcriptional regulator Regulator
  AB8813_RS17340 (AB8813_17410) pilB 4017315..4019060 (-) 1746 WP_104613413.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB8813_RS17345 (AB8813_17415) - 4019092..4019568 (-) 477 WP_343237020.1 pilin -
  AB8813_RS17350 (AB8813_17420) - 4019643..4020083 (-) 441 WP_104613411.1 pilin -
  AB8813_RS17355 (AB8813_17425) pilC 4020430..4021686 (+) 1257 WP_104613429.1 type II secretion system F family protein Machinery gene
  AB8813_RS17360 (AB8813_17430) - 4021693..4022556 (+) 864 WP_016849610.1 A24 family peptidase -
  AB8813_RS17365 (AB8813_17435) coaE 4022570..4023193 (+) 624 WP_104613410.1 dephospho-CoA kinase -
  AB8813_RS17370 (AB8813_22510) - 4023203..4023441 (+) 239 Protein_3399 SymE family type I addiction module toxin -
  AB8813_RS17375 (AB8813_17445) - 4023545..4024879 (-) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  AB8813_RS17380 (AB8813_17450) - 4024872..4025549 (-) 678 WP_006448355.1 response regulator transcription factor -
  AB8813_RS17385 (AB8813_17455) - 4025577..4026055 (-) 479 Protein_3402 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45803.19 Da        Isoelectric Point: 10.2556

>NTDB_id=1033343 AB8813_RS17355 WP_104613429.1 4020430..4021686(+) (pilC) [Xanthomonas arboricola pv. corylina strain NCPPB 935]
MSVARNVIKKPVDRSTSQLQPFIWEGTDKRGVKMKGEQTARNVNMLRAELRRQGITPNVVKPKPKPLFGAAGKKVTPKDI
SFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKQMVGQIRTDIEGGSSLHESISRHPVQFDELYRNLVRAGEGAGVLET
VLDTVATYKENIEALKGKIKKALFYPAMVVVVALVVSAILLVFVVPQFEEVFKGFGAELPAFTQMIVAASRFMVSYWWAL
LVIVAGAVIGFIYAYKRSPRMQHGMDRIILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEEA
VLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVG
GMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1033343 AB8813_RS17355 WP_104613429.1 4020430..4021686(+) (pilC) [Xanthomonas arboricola pv. corylina strain NCPPB 935]
ATGTCCGTCGCTCGCAACGTCATCAAAAAACCAGTCGATCGAAGCACAAGCCAGCTGCAGCCGTTTATCTGGGAAGGAAC
GGACAAGCGCGGCGTCAAGATGAAGGGAGAGCAAACGGCGCGCAACGTAAACATGTTGCGCGCCGAACTTCGGCGCCAGG
GTATTACACCAAACGTCGTTAAGCCCAAGCCAAAGCCACTGTTTGGCGCGGCAGGCAAAAAAGTGACTCCTAAGGACATC
TCGTTCTTTAGCCGCCAAATGGCAACCATGATGAAATCCGGCGTACCTATTGTTGGTTCACTGGAAATTATTGGGGAGGG
TCACAAAAACCCACGGATGAAGCAAATGGTTGGTCAGATAAGAACCGATATCGAGGGAGGCTCGTCCCTACATGAATCCA
TTAGCAGACACCCAGTTCAATTTGACGAGCTCTACCGAAACCTAGTCCGCGCAGGTGAAGGCGCGGGCGTGCTAGAAACC
GTACTCGACACAGTTGCAACTTACAAAGAAAATATTGAGGCATTGAAGGGCAAGATCAAGAAAGCTCTTTTCTACCCTGC
GATGGTCGTCGTAGTTGCTCTCGTGGTTAGCGCAATCCTGCTAGTTTTCGTAGTTCCACAGTTCGAAGAGGTTTTCAAGG
GCTTTGGTGCGGAATTACCTGCTTTCACACAAATGATCGTAGCCGCATCGCGCTTTATGGTTAGCTACTGGTGGGCTCTA
TTGGTCATCGTAGCGGGCGCAGTCATTGGTTTCATTTATGCCTACAAGCGCTCGCCACGCATGCAGCACGGCATGGATCG
GATTATCTTAAAGGTACCTGTCATAGGCCAAATCATGCACAACAGCGCGATCGCTCGCTTCGCCCGCACAACTGCCGTTA
CCTTTAAAGCCGGTGTTCCGTTAGTGGAAGCGCTAGGGATTGTGGCTGGCGCCACAGGCAATAAAGTCTACGAAGAAGCC
GTGCTTCGCATGCGAGACGATGTGTCGGTGGGCTACCCGGTCAACATGGCCATGAAACAGGTCAATTTATTCCCGCACAT
GGTGATCCAAATGACTGCCATTGGCGAGGAAGCAGGTGCGCTTGACACTATGCTGTTCAAGGTTGCCGAGTACTTCGAGC
AGGAAGTTAACAACGCCGTGGATGCGCTCAGCAGCCTACTGGAACCGCTGATCATGGTGTTCATCGGCACCATCGTAGGC
GGCATGGTCATAGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.202

97.129

0.517
  pilC Pseudomonas stutzeri DSM 10701

52.525

94.737

0.498
  pilC Acinetobacter baylyi ADP1

51.365

96.411

0.495
  pilC Acinetobacter baumannii D1279779

50.62

96.411

0.488
  pilG Neisseria gonorrhoeae MS11

43.86

95.455

0.419
  pilG Neisseria meningitidis 44/76-A

43.358

95.455

0.414
  pilC Vibrio cholerae strain A1552

41.5

95.694

0.397
  pilC Vibrio campbellii strain DS40M4

40.695

96.411

0.392

Multiple sequence alignment