Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB8813_RS17335 Genome accession   NZ_CP166095
Coordinates   4015706..4017100 (+) Length   464 a.a.
NCBI ID   WP_104613414.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. corylina strain NCPPB 935     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4010706..4022100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8813_RS17320 (AB8813_17390) sucD 4011599..4012474 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  AB8813_RS17325 (AB8813_17395) sucC 4012499..4013668 (-) 1170 WP_016901264.1 ADP-forming succinate--CoA ligase subunit beta -
  AB8813_RS17330 (AB8813_17400) - 4013900..4015513 (+) 1614 WP_039512337.1 PAS domain-containing sensor histidine kinase -
  AB8813_RS17335 (AB8813_17405) pilR 4015706..4017100 (+) 1395 WP_104613414.1 sigma-54 dependent transcriptional regulator Regulator
  AB8813_RS17340 (AB8813_17410) pilB 4017315..4019060 (-) 1746 WP_104613413.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB8813_RS17345 (AB8813_17415) - 4019092..4019568 (-) 477 WP_343237020.1 pilin -
  AB8813_RS17350 (AB8813_17420) - 4019643..4020083 (-) 441 WP_104613411.1 pilin -
  AB8813_RS17355 (AB8813_17425) pilC 4020430..4021686 (+) 1257 WP_104613429.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50214.64 Da        Isoelectric Point: 6.5112

>NTDB_id=1033341 AB8813_RS17335 WP_104613414.1 4015706..4017100(+) (pilR) [Xanthomonas arboricola pv. corylina strain NCPPB 935]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGAPSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1033341 AB8813_RS17335 WP_104613414.1 4015706..4017100(+) (pilR) [Xanthomonas arboricola pv. corylina strain NCPPB 935]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCTGACGGCAACGGCATTGAACTGGTTACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCTTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAGCTGAATAACCGCGACCGCCCTGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCACATGCCGACAAGCCAGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
GCCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTCACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACCCCCGGCAGCGCCGCC
GTCGAGCCCCGCGAAGCAGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCACTCGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment