Detailed information NTG1032576

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: AB8E26_RS12550
• Genome accession: NZ_CP165963
• Coordinates: 2777676..2778935 (-)
• Length: 419 a.a.
• NCBI ID: WP_369968047.1
• Uniprot ID: -
• Organism: Stenotrophomonas rhizophila strain busan1-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2773591..2781922	2777676..2778935	within	0

Gene organization within MGE regions

Location: 2773591..2781922

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8E26_RS12525 (AB8E26_12535)	-	2773600..2774064 (+)	465	WP_328803786.1	hypothetical protein	-
AB8E26_RS12530 (AB8E26_12540)	-	2774073..2774750 (+)	678	WP_017356179.1	response regulator transcription factor	-
AB8E26_RS12535 (AB8E26_12545)	-	2774713..2776080 (+)	1368	WP_369968045.1	sensor histidine kinase	-
AB8E26_RS12540 (AB8E26_12550)	coaE	2776177..2776794 (-)	618	WP_369968046.1	dephospho-CoA kinase	-
AB8E26_RS12545 (AB8E26_12555)	-	2776805..2777668 (-)	864	WP_128095489.1	A24 family peptidase	-
AB8E26_RS12550 (AB8E26_12560)	pilC	2777676..2778935 (-)	1260	WP_369968047.1	type II secretion system F family protein	Machinery gene
AB8E26_RS12555 (AB8E26_12565)	pilA2	2779293..2779727 (+)	435	WP_369970414.1	pilin	Machinery gene
AB8E26_RS12560 (AB8E26_12570)	-	2779798..2781009 (+)	1212	WP_369968048.1	isoprenylcysteine carboxylmethyltransferase family protein	-
AB8E26_RS12565 (AB8E26_12575)	-	2780996..2781922 (+)	927	WP_369968049.1	serine hydrolase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 45898.32 Da
• Isoelectric Point: 10.1177

>NTDB_id=1032576 AB8E26_RS12550 WP_369968047.1 2777676..2778935(-) (pilC) [Stenotrophomonas rhizophila strain busan1-1]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGIKMKGEQPAKNANLLRAELRRMGITPNVVKPKPKPLFGAAGKAVGARD
ISFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDSIRTDIEGGSSLHEAISRHPVQFDELYRNLVKAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVVVALLVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGMSRFMVSYWWL
MAIIVGGSIAGFIFAYKRSPAMQHTMDRWILKFPVIGEIMNNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNRFPHMVIQMTAIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=1032576 AB8E26_RS12550 WP_369968047.1 2777676..2778935(-) (pilC) [Stenotrophomonas rhizophila strain busan1-1]
ATGTCCGTTAGCCGTAGTGCAATCAAGAAAGAGCCCGTGGCGCGAAGCACCATGGAGCTTCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGCGGAATCAAGATGAAGGGCGAGCAGCCCGCCAAGAATGCCAATTTGCTACGAGCGGAGCTACGACGCA
TGGGCATCACGCCTAATGTGGTCAAGCCCAAACCGAAGCCGCTGTTCGGAGCCGCAGGCAAAGCTGTCGGCGCCAGGGAT
ATTTCCTTTTTCAGTCGCCAGATGGCGACCATGATGAAATCCGGCGTTCCCATCGTAAGTGCTTTGGAGATCATCGGCAG
TGGGCATAAGAACCCGCGCATGAAGAAGATGGTCGACTCGATCCGCACCGATATTGAGGGCGGCTCTTCGTTGCATGAGG
CTATTAGCCGACATCCTGTACAGTTCGACGAACTCTATCGCAATCTAGTGAAGGCTGGCGAAGGCGCTGGCGTACTGGAA
ACCGTGCTGGATACGGTAGCAACCTATAAAGAGAACATTGAAGCGCTGAAGGGCAAGATCAAGAAGGCAATGTTCTACCC
TGCCATGGTAGTTGTGGTCGCGCTTCTGGTCAGTGCAATCCTGTTGATCTTTGTCGTCCCACAGTTCGAAGAGGTTTTCA
AAGGCTTTGGGGCGGAGCTTCCCGCGTTCACTCAAATGATCGTCGGCATGTCCCGGTTCATGGTTTCGTATTGGTGGTTG
ATGGCGATTATTGTCGGCGGCTCGATCGCTGGTTTCATATTTGCCTACAAGCGATCTCCTGCCATGCAGCACACGATGGA
CCGATGGATCCTCAAGTTCCCGGTGATCGGCGAGATCATGAACAACAGCGCCATCGCGCGGTTCTCCCGCACCACCGCCG
TGACCTTCAAGGCCGGTGTGCCGCTGGTGGAAGCGCTCGGTATCGTGGCCGGTGCCACCGGCAACAAGGTGTACGAGGAA
GCCGTCCTGCGCATGCGCGATGACGTGTCGGTCGGCTACCCGGTCAACATGGCGATGAAGCAGGTCAACCGCTTCCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCAGGCGCCCTGGATACCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATGCCGTTGACGCACTCAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATCGTG
GGTGGCATGGTGATCGGCATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.133	95.227	0.506
pilC	Acinetobacter baylyi ADP1	51.478	96.897	0.499
pilC	Acinetobacter baumannii D1279779	52.141	94.749	0.494
pilC	Pseudomonas stutzeri DSM 10701	50.985	96.897	0.494
pilG	Neisseria gonorrhoeae MS11	43.97	94.988	0.418
pilG	Neisseria meningitidis 44/76-A	43.358	95.227	0.413
pilC	Vibrio cholerae strain A1552	41.379	96.897	0.401
pilC	Vibrio campbellii strain DS40M4	40.05	95.943	0.384