Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB4P94_RS02070 Genome accession   NZ_CP162592
Coordinates   453503..454711 (+) Length   402 a.a.
NCBI ID   WP_395609198.1    Uniprot ID   -
Organism   Pseudomonas sp. B22129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448503..459711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P94_RS02045 (AB4P94_02035) nadC 449092..449940 (+) 849 WP_395609194.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB4P94_RS02050 (AB4P94_02040) - 449983..450288 (-) 306 WP_395609195.1 DUF6388 family protein -
  AB4P94_RS02055 (AB4P94_02045) - 450705..452660 (+) 1956 WP_395609196.1 acyltransferase family protein -
  AB4P94_RS02065 (AB4P94_02055) - 452886..453299 (-) 414 WP_395609197.1 pilin -
  AB4P94_RS02070 (AB4P94_02060) pilC 453503..454711 (+) 1209 WP_395609198.1 type II secretion system F family protein Machinery gene
  AB4P94_RS02075 (AB4P94_02065) pilD 454708..455574 (+) 867 WP_395609199.1 prepilin peptidase Machinery gene
  AB4P94_RS02080 (AB4P94_02070) coaE 455571..456194 (+) 624 WP_395609200.1 dephospho-CoA kinase -
  AB4P94_RS02085 (AB4P94_02075) yacG 456191..456391 (+) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  AB4P94_RS02090 (AB4P94_02080) - 456388..456603 (-) 216 WP_025856597.1 hypothetical protein -
  AB4P94_RS02095 (AB4P94_02085) - 456677..457366 (-) 690 WP_395609201.1 energy-coupling factor ABC transporter permease -
  AB4P94_RS02100 (AB4P94_02090) - 457496..458125 (+) 630 WP_083360208.1 DUF1780 domain-containing protein -
  AB4P94_RS02105 (AB4P94_02095) - 458215..458388 (+) 174 WP_016971625.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43415.73 Da        Isoelectric Point: 10.2783

>NTDB_id=1027306 AB4P94_RS02070 WP_395609198.1 453503..454711(+) (pilC) [Pseudomonas sp. B22129]
MNEASTIYAWEGINRKGRRVSGKTAGKSLALIKAQLRQQGICPSRVRKKTPSLPSFAPPIRPADTALFTRQLATLLRAGI
PLLQAFDIIREGFDHRQMRALIQGLKQEIAGGNTLSAALRKHPRHFDELYCNLVAAGEQAGALETLLERVAIHLEKSQQL
KARIKKAMTYPAAVIVVACGVSTVLLIHVVPQFQNLFAGVDGNLPSFTLAVIALSEFLQRAWWMIALGTGGALIGFRQAY
QSSQGLRHQVDAGLLNVPLAGTLLKKSAIARYARTLSTTFAAGVPLVQALGSVAGATGNGMFKQAIEHMRHDVSTGMQLH
QSMTRSGLFPRMAIQMTAIGEESGTLDSMLEKVADHYEADVDNLVDNLTSLMEPLIMVILGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1027306 AB4P94_RS02070 WP_395609198.1 453503..454711(+) (pilC) [Pseudomonas sp. B22129]
ATGAATGAAGCCTCAACGATCTACGCCTGGGAAGGCATCAACCGCAAGGGTCGCAGGGTATCCGGTAAAACTGCCGGAAA
AAGCCTTGCCCTGATCAAGGCACAATTGCGCCAGCAAGGCATCTGCCCCAGCCGCGTGCGCAAGAAAACCCCGAGCTTGC
CAAGCTTCGCTCCACCGATAAGGCCCGCCGATACTGCGCTGTTCACACGCCAGTTGGCGACCTTGCTGCGCGCCGGCATA
CCGCTGCTGCAAGCGTTCGATATCATCCGCGAGGGCTTCGACCACCGCCAGATGCGCGCACTGATACAAGGCTTGAAACA
GGAAATCGCCGGTGGTAACACGCTGTCGGCAGCACTGCGCAAACACCCGCGCCACTTCGATGAGCTGTATTGCAACCTGG
TTGCCGCCGGTGAACAGGCCGGCGCCCTGGAAACCCTGCTGGAACGGGTGGCGATTCATCTGGAGAAAAGCCAGCAGCTC
AAGGCCCGCATCAAAAAGGCCATGACTTACCCTGCTGCCGTCATCGTGGTCGCGTGCGGGGTCAGCACAGTGCTGCTGAT
CCACGTGGTGCCGCAGTTCCAGAACCTGTTCGCCGGGGTCGATGGCAACCTGCCAAGCTTTACATTGGCTGTCATTGCCC
TGTCCGAGTTCCTGCAGCGAGCCTGGTGGATGATTGCGCTGGGCACAGGCGGCGCACTCATCGGGTTTCGACAGGCCTAT
CAAAGCTCCCAGGGTTTACGTCATCAGGTGGACGCCGGTTTGTTGAACGTGCCTCTGGCAGGCACACTGCTGAAAAAATC
CGCCATCGCCCGTTACGCCCGCACCCTCTCGACGACCTTTGCGGCGGGCGTGCCTTTGGTGCAGGCTCTGGGTTCCGTGG
CAGGCGCGACGGGAAATGGAATGTTCAAACAGGCGATCGAACATATGCGTCACGATGTATCCACCGGCATGCAATTGCAT
CAGTCCATGACCCGCAGCGGTCTGTTTCCCCGCATGGCCATCCAAATGACGGCGATCGGAGAAGAGTCGGGCACTCTGGA
TAGCATGCTGGAGAAGGTTGCCGATCACTACGAGGCCGATGTGGATAACCTGGTCGACAACCTCACGAGCCTGATGGAGC
CGTTGATCATGGTGATATTGGGTGGCATTGTCGGCGCGCTGGTGATCGCCATGTACCTGCCGGTGTTCCAGTTGGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.586

98.507

0.577
  pilC Acinetobacter baylyi ADP1

51.768

98.507

0.51
  pilC Acinetobacter baumannii D1279779

51.646

98.259

0.507
  pilC Legionella pneumophila strain ERS1305867

50.127

98.259

0.493
  pilG Neisseria gonorrhoeae MS11

41.885

95.025

0.398
  pilG Neisseria meningitidis 44/76-A

41.361

95.025

0.393
  pilC Vibrio campbellii strain DS40M4

39.394

98.507

0.388
  pilC Vibrio cholerae strain A1552

39.141

98.507

0.386
  pilC Thermus thermophilus HB27

36.567

100

0.366

Multiple sequence alignment