Detailed information NTG1027307

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4P94_RS02075
• Genome accession: NZ_CP162592
• Coordinates: 454708..455574 (+)
• Length: 288 a.a.
• NCBI ID: WP_395609199.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B22129
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 449708..460574

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P94_RS02050 (AB4P94_02040)	-	449983..450288 (-)	306	WP_395609195.1	DUF6388 family protein	-
AB4P94_RS02055 (AB4P94_02045)	-	450705..452660 (+)	1956	WP_395609196.1	acyltransferase family protein	-
AB4P94_RS02065 (AB4P94_02055)	-	452886..453299 (-)	414	WP_395609197.1	pilin	-
AB4P94_RS02070 (AB4P94_02060)	pilC	453503..454711 (+)	1209	WP_395609198.1	type II secretion system F family protein	Machinery gene
AB4P94_RS02075 (AB4P94_02065)	pilD	454708..455574 (+)	867	WP_395609199.1	prepilin peptidase	Machinery gene
AB4P94_RS02080 (AB4P94_02070)	coaE	455571..456194 (+)	624	WP_395609200.1	dephospho-CoA kinase	-
AB4P94_RS02085 (AB4P94_02075)	yacG	456191..456391 (+)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
AB4P94_RS02090 (AB4P94_02080)	-	456388..456603 (-)	216	WP_025856597.1	hypothetical protein	-
AB4P94_RS02095 (AB4P94_02085)	-	456677..457366 (-)	690	WP_395609201.1	energy-coupling factor ABC transporter permease	-
AB4P94_RS02100 (AB4P94_02090)	-	457496..458125 (+)	630	WP_083360208.1	DUF1780 domain-containing protein	-
AB4P94_RS02105 (AB4P94_02095)	-	458215..458388 (+)	174	WP_016971625.1	DUF3094 family protein	-
AB4P94_RS02110 (AB4P94_02100)	-	458449..459747 (+)	1299	WP_395609202.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31760.93 Da
• Isoelectric Point: 7.5691

>NTDB_id=1027307 AB4P94_RS02075 WP_395609199.1 454708..455574(+) (pilD) [Pseudomonas sp. B22129]
MSLLLIERPWLFVGIALVLGLIVGSFLNVLVWRLPKMLEREWRAQAQEILGLPADPEGPVYNLAQPNSCCPQCNQPIRPW
ENIPLLSYLMLRARCAHCREPISARYPFTELACALISGAVAWHFGFGWEAGAVLLLSWGLLGMSLIDTDHQLLPDVLVLP
LLWLGLIANGFGLLATLHDALWGAVIGYMSLWTVFWVFKRVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVC
AGLVLMRLRKSQASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=1027307 AB4P94_RS02075 WP_395609199.1 454708..455574(+) (pilD) [Pseudomonas sp. B22129]
TTGAGCCTGCTGCTGATTGAACGACCGTGGTTGTTTGTCGGGATCGCGCTGGTGTTGGGCCTGATCGTCGGCAGCTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTGGAACGTGAATGGCGTGCCCAGGCCCAGGAGATTCTCGGCTTGCCGG
CTGACCCCGAAGGCCCCGTTTACAACCTTGCGCAGCCCAATTCCTGCTGCCCGCAGTGCAACCAGCCGATTCGCCCCTGG
GAAAACATTCCCCTGCTCAGCTACCTGATGCTCAGGGCGCGTTGTGCTCATTGCCGCGAGCCGATCAGCGCCCGCTATCC
CTTCACGGAACTCGCCTGTGCGCTGATCTCTGGCGCAGTGGCCTGGCATTTCGGCTTCGGCTGGGAAGCAGGCGCGGTGC
TGCTGCTGAGCTGGGGCCTGCTGGGAATGAGCCTGATCGACACGGACCATCAGTTGTTGCCGGACGTGCTGGTGCTGCCA
TTGCTGTGGCTGGGTTTGATCGCTAACGGGTTCGGCTTGCTGGCGACGCTGCACGATGCGCTGTGGGGCGCGGTCATTGG
TTATATGAGCCTGTGGACAGTGTTCTGGGTGTTCAAGCGGGTCACCGGCAAGGACGGCATGGGCCACGGCGACTTCAAGT
TACTGGCCCTGCTCGGTGCCTGGGGTGGTTGGCAGATTTTGCCGATGACGCTGCTGATGGCATCGCTGCTCGGGGTGTGT
GCCGGGCTTGTGCTGATGCGTTTGCGCAAGTCCCAGGCCTCGGTGCCCATGCCTTTTGGGCCGTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.313	97.569	0.51
pilD	Vibrio campbellii strain DS40M4	48.746	96.875	0.472
pilD	Neisseria gonorrhoeae MS11	48.889	93.75	0.458
pilD	Acinetobacter nosocomialis M2	47.292	96.181	0.455
pilD	Acinetobacter baumannii D1279779	47.292	96.181	0.455