Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB4P90_RS04905 Genome accession   NZ_CP162588
Coordinates   999472..1000680 (-) Length   402 a.a.
NCBI ID   WP_201913632.1    Uniprot ID   -
Organism   Pseudomonas sp. B16120     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 994472..1005680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P90_RS04865 (AB4P90_04850) - 994480..995778 (-) 1299 WP_014716868.1 NAD(P)/FAD-dependent oxidoreductase -
  AB4P90_RS04870 (AB4P90_04855) - 995839..996012 (-) 174 WP_014716869.1 DUF3094 family protein -
  AB4P90_RS04875 (AB4P90_04860) - 996067..996696 (-) 630 WP_003188431.1 DUF1780 domain-containing protein -
  AB4P90_RS04880 (AB4P90_04865) - 996826..997515 (+) 690 WP_038448869.1 energy-coupling factor ABC transporter permease -
  AB4P90_RS04885 (AB4P90_04870) - 997580..997795 (+) 216 WP_003171680.1 hypothetical protein -
  AB4P90_RS04890 (AB4P90_04875) yacG 997792..997992 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  AB4P90_RS04895 (AB4P90_04880) coaE 997989..998612 (-) 624 WP_032903992.1 dephospho-CoA kinase -
  AB4P90_RS04900 (AB4P90_04885) pilD 998609..999475 (-) 867 WP_014716872.1 A24 family peptidase Machinery gene
  AB4P90_RS04905 (AB4P90_04890) pilC 999472..1000680 (-) 1209 WP_201913632.1 type II secretion system F family protein Machinery gene
  AB4P90_RS04910 (AB4P90_04895) - 1000882..1001295 (+) 414 WP_014716874.1 pilin -
  AB4P90_RS04920 (AB4P90_04905) - 1001585..1001890 (+) 306 WP_014716875.1 DUF6388 family protein -
  AB4P90_RS04925 (AB4P90_04910) nadC 1001940..1002788 (-) 849 WP_014716876.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB4P90_RS04930 (AB4P90_04915) - 1003034..1005181 (+) 2148 WP_103451984.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43782.40 Da        Isoelectric Point: 10.2753

>NTDB_id=1027228 AB4P90_RS04905 WP_201913632.1 999472..1000680(-) (pilC) [Pseudomonas sp. B16120]
MNDTSTIYAWEGINRKGRRVSGQIAGHNLALIKLQLRQQGICPERVRKKSYGLHIFKTRITPADIALFTRQLATLLKAGI
PLLQAFDIISEGVENPQLRELVKALKQHIASGHPLAAALRQYPRHFDELYCNLVAAGEMAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPFAVLVIATGVSTVLLIHVVPQFQNLFAGVNGQLPGFTLGVIALSELLQQAWWMLGLGVGAALVVGRHAY
RTYPGFRHWWAAGLLKVPMAGKLLHKSAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIERMRHDVSTGMQLN
QSMHNSGLFPGMAIQMTAIGEESGTLDRMLEKVANHYESDVDTLVDNLTSLMEPLIMVVLGGIVGALVVAMYLPVFQLGA
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1027228 AB4P90_RS04905 WP_201913632.1 999472..1000680(-) (pilC) [Pseudomonas sp. B16120]
ATGAACGACACGTCGACAATTTATGCCTGGGAAGGCATCAACCGCAAAGGGCGCCGGGTGTCCGGGCAAATCGCCGGCCA
TAACCTTGCGCTGATCAAGCTGCAACTGCGCCAGCAAGGCATCTGCCCTGAGCGTGTGCGCAAGAAATCTTATGGTTTAC
ACATCTTCAAGACGCGAATAACGCCTGCAGATATCGCCCTGTTCACTCGCCAGTTGGCCACCTTGCTCAAAGCCGGCATC
CCACTGCTGCAAGCCTTCGACATCATCAGCGAAGGCGTCGAAAACCCACAGCTGCGCGAACTGGTCAAGGCGTTGAAACA
GCATATTGCCAGCGGCCACCCGTTGGCCGCTGCCCTGCGTCAATATCCCCGCCATTTCGATGAGCTGTACTGCAATCTGG
TGGCGGCTGGCGAAATGGCCGGCGCCCTGGAAACCCTGCTGGAGCGTGTGGCGATTCATTTGGAAAAAAGCCAACGGCTC
AAAACCAGGATCAAGAAAGCCATGACCTACCCTTTCGCGGTACTGGTAATTGCCACAGGGGTGAGCACAGTGCTGTTGAT
CCATGTGGTGCCGCAATTCCAGAACTTGTTCGCCGGGGTCAACGGCCAATTGCCGGGGTTTACCCTGGGGGTCATCGCGC
TGTCGGAACTGCTGCAACAGGCGTGGTGGATGCTGGGGCTGGGTGTGGGCGCGGCGCTGGTTGTGGGGCGCCACGCCTAC
CGTACTTACCCGGGGTTTCGCCATTGGTGGGCAGCAGGTTTGTTGAAAGTGCCCATGGCAGGCAAACTGCTGCACAAATC
TGCGGTCGCCCGCTACGCTCGTACACTTTCCACCACCTTTGCGGCGGGCGTCCCTCTGGTACAGGCATTGGGTTCGGTGG
CCGGCGCCGTCGGCAATGGCCCCTTCAAACAGGCAATCGAACGTATGCGCCACGATGTATCCACAGGCATGCAGTTGAAT
CAATCGATGCATAACAGCGGCCTGTTCCCAGGCATGGCGATCCAGATGACCGCAATCGGGGAAGAGTCCGGCACCCTGGA
CCGCATGCTGGAAAAAGTCGCGAACCACTACGAGTCAGACGTGGATACCTTGGTCGACAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTCGTATTGGGAGGGATTGTCGGCGCGCTGGTAGTGGCCATGTACCTGCCGGTGTTCCAATTGGGGGCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.286

99.005

0.567
  pilC Acinetobacter baylyi ADP1

50.505

98.507

0.498
  pilC Acinetobacter baumannii D1279779

50.127

98.259

0.493
  pilC Legionella pneumophila strain ERS1305867

48.101

98.259

0.473
  pilC Vibrio cholerae strain A1552

40.204

97.761

0.393
  pilG Neisseria gonorrhoeae MS11

40.209

95.274

0.383
  pilC Thermus thermophilus HB27

38.155

99.751

0.381
  pilG Neisseria meningitidis 44/76-A

39.687

95.274

0.378
  pilC Vibrio campbellii strain DS40M4

38.265

97.512

0.373

Multiple sequence alignment