Detailed information NTG1027227

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4P90_RS04900
• Genome accession: NZ_CP162588
• Coordinates: 998609..999475 (-)
• Length: 288 a.a.
• NCBI ID: WP_014716872.1
• Uniprot ID: A0AAU0SIH3
• Organism: Pseudomonas sp. B16120
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 993609..1004475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P90_RS04865 (AB4P90_04850)	-	994480..995778 (-)	1299	WP_014716868.1	NAD(P)/FAD-dependent oxidoreductase	-
AB4P90_RS04870 (AB4P90_04855)	-	995839..996012 (-)	174	WP_014716869.1	DUF3094 family protein	-
AB4P90_RS04875 (AB4P90_04860)	-	996067..996696 (-)	630	WP_003188431.1	DUF1780 domain-containing protein	-
AB4P90_RS04880 (AB4P90_04865)	-	996826..997515 (+)	690	WP_038448869.1	energy-coupling factor ABC transporter permease	-
AB4P90_RS04885 (AB4P90_04870)	-	997580..997795 (+)	216	WP_003171680.1	hypothetical protein	-
AB4P90_RS04890 (AB4P90_04875)	yacG	997792..997992 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
AB4P90_RS04895 (AB4P90_04880)	coaE	997989..998612 (-)	624	WP_032903992.1	dephospho-CoA kinase	-
AB4P90_RS04900 (AB4P90_04885)	pilD	998609..999475 (-)	867	WP_014716872.1	A24 family peptidase	Machinery gene
AB4P90_RS04905 (AB4P90_04890)	pilC	999472..1000680 (-)	1209	WP_201913632.1	type II secretion system F family protein	Machinery gene
AB4P90_RS04910 (AB4P90_04895)	-	1000882..1001295 (+)	414	WP_014716874.1	pilin	-
AB4P90_RS04920 (AB4P90_04905)	-	1001585..1001890 (+)	306	WP_014716875.1	DUF6388 family protein	-
AB4P90_RS04925 (AB4P90_04910)	nadC	1001940..1002788 (-)	849	WP_014716876.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31731.98 Da
• Isoelectric Point: 7.3271

>NTDB_id=1027227 AB4P90_RS04900 WP_014716872.1 998609..999475(-) (pilD) [Pseudomonas sp. B16120]
MSLLLSEHPWAFVGLALVLGLIVGSFLNVLAWRLPKMLEREWRAQAHEILDLPAEPGGPAYNLMRPNSCCPRCNQPIRPW
ENIPVLSYLLLRGHCAHCREPIGLRYPLTELACALISTAVAWHFGFGWQAGAVMLLSWGLLGMSLIDLDHQLLPDVLVLP
LLWLGLILNSADLLTPLPDAVWGAVIGYMSLWCLFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVL
AGLILLRLRKAQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1027227 AB4P90_RS04900 WP_014716872.1 998609..999475(-) (pilD) [Pseudomonas sp. B16120]
TTGAGCCTGCTGCTGAGCGAACATCCCTGGGCGTTTGTTGGCCTGGCGCTGGTGTTGGGCCTGATCGTCGGCAGCTTCCT
CAATGTGCTGGCGTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGTGCCCAGGCCCATGAGATTCTCGACTTGCCAG
CCGAGCCCGGTGGGCCGGCCTATAACCTGATGCGTCCGAACTCCTGCTGCCCGCGCTGCAATCAACCGATTCGGCCTTGG
GAAAATATCCCGGTGCTCAGCTACCTGTTGCTCCGGGGGCATTGTGCCCACTGCCGTGAGCCCATCGGCCTGCGTTACCC
CCTCACCGAACTCGCGTGCGCGCTGATCTCAACCGCTGTCGCCTGGCACTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGTTGAGTTGGGGCTTGCTGGGCATGAGCCTGATTGATCTGGACCACCAACTGCTGCCGGATGTGCTGGTGCTGCCG
CTGCTATGGCTGGGGCTGATCCTCAACAGTGCTGACCTGTTGACGCCACTGCCCGATGCAGTGTGGGGCGCGGTTATCGG
CTACATGAGCTTGTGGTGCCTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAAGACGGCATGGGCCATGGCGACTTCAAAT
TATTGGCCTTGCTGGGAGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGATGGCCTCGCTGCTGGGCGTGCTT
GCCGGGCTGATCCTGCTGCGTTTGCGTAAGGCTCAGGTGTCAGCGCCGATGCCGTTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.65	98.264	0.517
pilD	Vibrio campbellii strain DS40M4	50	98.611	0.493
pilD	Neisseria gonorrhoeae MS11	50	93.75	0.469
pilD	Acinetobacter baumannii D1279779	47.985	94.792	0.455
pilD	Acinetobacter nosocomialis M2	47.253	94.792	0.448